Cyanistes caeruleus (blue tit): 111939455
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Entry
111939455 CDS
T05602
Symbol
SMG5
Name
(RefSeq) protein SMG5 isoform X1
KO
K11125
protein SMG5
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111939455 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccae03019
]
111939455 (SMG5)
03032 DNA replication proteins [BR:
ccae03032
]
111939455 (SMG5)
Messenger RNA biogenesis [BR:
ccae03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
111939455 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
111939455 (SMG5)
DNA replication proteins [BR:
ccae03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
111939455 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
111939455
NCBI-ProteinID:
XP_023797442
UniProt:
A0A8C0URT3
LinkDB
All DBs
Position
25
AA seq
958 aa
AA seq
DB search
MFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLL
LYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASEKEMEWAQMACHRCLVYLGDLARYQN
ELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEATYCYLRCIQSEVSFE
GAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRSLDSELTSLCQSVLEDFNLCLFYLPS
PPNLSSTTEDEEEYENGYSFLPDLLIFRMVIICLMSVHSLKRAGSKQYSAAIAFTLALFS
HLINHVNIRLQAELEEGENPVPAFQSDGTDDQEPREPVNSVEKEAEAELANHQPSEEQRK
NDCKKSKKYSRLSCLRRRRHPQKVDESDLSEGFDSDSSQSSIKGSDGSESGSEKSDEEAE
AAFDVETDSDMNSQESRSDLEDMEDEPGEEGSSQGKSGPKEALKNCVDGSGLGDSKNPSI
SKTEAVDPAVNGPASLSTDASIASNLQAMSTQLFQTKRCFRLAPTFSNILLKPNSEPSAL
KDGVEGKPCVNGDLEKPSLVEQDDVSDSEESISSNKSCRNERSLQEKLEIVTNEGLLLTV
KVFLDWLRTNTDLIIMCAQSSQSLWNRLSVLLNLLPSAADLQESGLALCDEVKDILSDAE
LPDLKASLLLPEDVALRNLPALKNAHKRFNFEQDRPIFSAVEESVVRICCIRSFGHFITH
LQSGILQFNSELGIFISIAQSEQDNLLHQAQAQFHMAAEEARRNRLMRDMAQLRLQLEVS
QLEGSLQQPKAQSAMSPYLVPDTQALCQHLALVKQLATSGRFIIIIPRTVIDGLDFLKKE
NAGARDSIRYLEAEFKKGNRYIRCQKDVGKSFERHKLKRQDLDAWNLYKILDSCKQLTVS
QGSGEDDTTGMVTIITGFQLEDPSSFSVPMQSAIQAATNANIEIKNVLEFYKQWKEMG
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgcatccagtggattatggaagaaaagcagaagaactgctctggagaaaggtt
tactatgaagttatccagctcattaaaacaaataaaaagcacatccacagccgcagcacc
ctggagtgcgcataccgcactcacctggtggctggcataggattttaccagcaccttctg
ctctacatccagtctcactatcagctggagttgcagtgttgcatcgactggacacacgta
acggacccactcataggctgcaagaaacctgtgtctgcgtcagagaaggagatggagtgg
gcacagatggcctgtcaccgatgtctggtttatctgggagatctagctcgctatcagaat
gagctggcaggtgtggacacggagctgctggctgagcgattttactatcaagccctttct
gttgcaccacaaattggaatgcccttcaaccaactggggacgttggcagggagcaaatac
tacaatgtggaagcgacctactgctacttacgctgcatccagtctgaggtgtctttcgaa
ggtgcctatgggaacctgaagcggctatatgacaaagcagccaagatgtatcatcagctg
aagaaatgtgaaaccaggaagttgtctccaagcaagaaacgctctttggattctgagctg
acatctctctgccagtctgtgctggaagatttcaacctatgcttgttctacctgccctct
cctcctaacctgagctcaactactgaagatgaagaagagtatgagaatggctactccttc
cttcctgatctcctgatctttcgcatggtgatcatctgccttatgagtgttcacagcctc
aagagggcaggttccaagcagtacagtgcagccattgccttcacactggccctcttctct
catctgataaatcacgtcaatattcgcctccaggctgagctagaagaaggggaaaatcct
gtcccagcctttcagagtgatggcacagatgaccaggagccacgggagcctgtgaactca
gttgagaaggaagctgaagctgagttggccaatcatcagcccagtgaggaacagcggaag
aacgactgcaagaaaagcaaaaaatactctcgtctctcctgtctgcgccgccgccgccac
ccccagaaggtggatgagagtgacctgagtgagggctttgactctgactccagccagagc
tccatcaagggcagtgatggctcagagagtggttcagagaagagtgatgaggaagcagaa
gctgcttttgatgtggagacagattccgacatgaacagccaagaatctcggtctgacttg
gaggacatggaggatgaaccgggtgaggagggaagcagccaaggcaaaagtgggcccaaa
gaggccttaaaaaactgtgtggatggcagtgggctgggggactccaagaacccaagcatc
tctaaaactgaggctgtggatccagcagtcaatgggccagcttccctgagcactgatgca
agcatagccagtaatctccaggccatgtccacccagctgttccagaccaaacgctgcttt
cgcttggctcccacgttcagcaacatcctcctgaaacccaacagtgaaccatctgccttg
aaggacggggtagagggcaagccatgtgtcaatggagatctggagaagcccagcttggta
gagcaagatgatgtgtctgactctgaagaaagcatttcaagtaacaaatcctgcagaaat
gagcgatcccttcaggagaagttggagatcgtgaccaatgaagggctgctgcttactgtc
aaggtgttcctggactggctgaggacaaacacagacctcatcattatgtgtgctcagagc
tctcagagcctgtggaacaggctgtctgtgctcctgaatcttctgccttctgctgcagac
ctgcaggaatcagggctggccctgtgtgatgaagtcaaagatatcctgagtgatgctgag
ctcccagacctgaaggccagcctgctgctccctgaagatgtggccctgcgcaatctcccc
gctctgaaaaatgcacacaagagatttaactttgagcaggaccggcccattttctcagca
gtagaggagtctgttgtgcggatctgctgcatccggagctttggccacttcattacccac
ttgcaaagtggcatcctgcagttcaactcagagcttgggatcttcatcagcatagcacag
tcagagcaagacaacttgctgcaccaggcccaggcccagtttcacatggctgcagaagaa
gctcgtcggaacaggctcatgagagacatggctcagcttcgactgcagctggaagtgtct
cagctggagggaagtctccagcagcccaaggcgcagtcagccatgtctccttaccttgtt
ccggacacccaggccctctgccagcacctggctcttgtaaagcagttggccactagtggg
aggttcataatcatcatccctcgaacagttatcgatggcctagacttcctgaaaaaggag
aatgccggtgctagggacagcattcggtatctggaggcagaatttaaaaagggaaacagg
tacatacgttgccagaaagatgttgggaagagctttgagaggcataaattgaagagacaa
gatttagatgcctggaatctctataaaatactggacagctgcaaacaattgacagtgtcc
cagggcagtggagaggatgacaccacgggaatggtcaccatcatcacgggctttcagctg
gaggacccgagctcgttctcggtgcccatgcagtctgccatccaggcagccacgaatgcc
aacatagagataaaaaatgttctggagttctacaagcagtggaaagagatgggctga
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