Cyanistes caeruleus (blue tit): 111942416
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Entry
111942416 CDS
T05602
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
111942416 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccae03021
]
111942416 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
ccae03019
]
111942416 (SUPT5H)
Transcription machinery [BR:
ccae03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
111942416 (SUPT5H)
RNA polymerase I system
111942416 (SUPT5H)
Messenger RNA biogenesis [BR:
ccae03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
111942416 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW2_Spt5
KOWx_SPT5
KOW
KOW7_SPT5
Ribonuc_P_40
DUF150_C
KOW1_SPT5
Arabino_trans_N
DUF6406
Motif
Other DBs
NCBI-GeneID:
111942416
NCBI-ProteinID:
XP_023801331
LinkDB
All DBs
Position
Unknown
AA seq
479 aa
AA seq
DB search
MRFCPNLWDFPPTPDHRGGQAHPVRAGEVRGPTRGHRPGGGDREHGSPEQIPRADPPSGS
SERILRADPPSRSPGQIPLSRSPERIPRADPLSGSPGQIPLSGSPERIPRADPLSGSPLP
TPQKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGNRYSRKGFLFKSFAMS
AVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNLQPGDNVEVCEGELINLQGK
ILSVDGNKVTILPKHEDLKDMLEFPAQELRKYFRMGDHVKVIAGRFEGDTGLIVRVEENF
VILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQ
VLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFR
GFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFAMCGFVPMSPRISSPMHPSGG
NT seq
1438 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttttgcccaaatctgtgggattttcccccaaccccagatcaccgagggggtcaa
gcccaccctgtccgagctggagaagttcgaggaccaacccgagggcatcgacctggaggt
ggtgaccgagagcacggatcccccgagcagatcccccgagcagatcccccgagcggatcc
tccgagcggatcctccgagcggatcccccaagcagatccccagggcagatccccttgagc
agatcccccgagcggatcccccgagcagatcccctgagcggatccccagggcagatcccc
ttgagcggatcccccgagcggatcccccgagcagatcccctgagcggatcccctctcccc
accccgcagaaggactggttcgccaagcgcaagaagttcaagcggccgccgcagcgcctg
ttcgatgccgagaagatccggtccctgggtggggacgtggcctccgacggcgacttcctg
atcttcgagggtaaccgctacagccggaagggtttcctgttcaagagctttgccatgtca
gctgtgatcaccgagggggtcaagcccaccctgtccgagctggagaagttcgaggaccaa
cccgagggcatcgacctggaggtggtgaccgagagcacggggaaggagcgggagcacaac
ctgcagccgggtgacaacgtggaggtgtgcgagggggagctcatcaacctgcaggggaag
atcctcagcgtggacggtaacaaggtcaccatcctgcccaagcacgaggacctcaaggac
atgctggagttcccggcgcaggagctgaggaaatatttccggatgggcgaccacgtgaag
gtgatcgccgggaggttcgagggtgacaccgggctgatcgtcagggtggaggagaacttt
gtcatcctcttctcggatctgaccatgcacgagctgaaggtgctgccccgggatctgcag
ctctgctccgagacggcctcgggggtggatgttggggggcagcacgagtggggggagctg
gtgcagctggacccccaaaccgtgggggtgatcgtgaggctggagagggaaaccttccag
gtgctgaacatgtacgggaaggtggtgacggtgcgtcaccaggctgtcacccggaagaag
gacaatcgctttgcggtggcgctggactcggagcagaacaacatccacgtcaaggacatc
gtcaaagtcatcgacggcccccactccggccgtgagggtgaaatccgccacctgttccgg
ggcttcgccttcctgcactgcaagaagctggtggagaacggggggatgttcgtgtgcaag
acgcggcacctggtgctggcggggggctccaagccccgcgacgtcaccaacttcgccatg
tgcggcttcgtgccgatgtccccccgcatcagcagccccatgcaccccagcggggggg
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