Cyanistes caeruleus (blue tit): 111944007 Help Entry 111944007         CDS       T05602                                  Symbol PATL1 Name (RefSeq) protein PAT1 homolog 1   KO K12617   DNA topoisomerase 2-associated protein PAT1 Organism ccae  Cyanistes caeruleus (blue tit) Pathway ccae03018   RNA degradation Brite KEGG Orthology (KO) [BR:ccae00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     111944007 (PATL1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ccae03019]     111944007 (PATL1) Messenger RNA biogenesis [BR:ccae03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      111944007 (PATL1)   mRNA degradation factors    5'-3' decay     Decapping complex      111944007 (PATL1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  PAT1 Motif Other DBs NCBI-GeneID:  111944007 NCBI-ProteinID:  XP_023802608 LinkDB All DBs Position Unknown AA seq 782 aa AA seqDB search PHPRLSQSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELED KAGSSREPDGPIGNDGDVLGDPEDALAERLTRLVIDSELEDPAIMQAVHTRDPPQQPGGL NSSIWDSSAVLRRIRGPLLAQEMPPVSVLDYALPQRPLQARDEERDPSERALPRRSSSPI IGSPPVRAVPIGTPPKQAAIPNFNQQILCPKPVHIRATMQQRYPTPYGERMSPNQLCNVP NSSLLGHPFPHSVPPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQG RVGQMMSTAGGFRAFFGAPPAPPPSQLPHPPGPGSHLQNLRPQTQMFRPDTTHLHPQHRR LLHQRQQQNRNQHRSLNGSGGDRGGHRSSHQEQIRKDPYANLMLQREKDWVSKIQMMQLQ STDPYLDDYYYQEWGIVRQCWEKPDLEQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQV AKLEHTYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTI EKTYSLLLDVEDYERRYLLSLEGERPALMGERKQKICDMYDNLRGKAPGQDRPSDDHFMQ IMCIRKGKRLVARILPFLAPEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYH LPLGTVTSLVQQLTNLPQSAAAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDTNTEL MQDNQWTELMLMATRELLRIPQGALAKPVSIPSNLISLFSRYVDQQKLNLLETKLHLVQG IR NT seq 2349 nt NT seq  +upstreamnt  +downstreamnt ccccatccccggctgtcccagtccctggaggactgcccgctggacgaggatgaagatgcc ttccaggccctgggggaggaggatgaagacatcgaccagttcaacgatgacacctttggg gccggggccgtcgatgatgactggcaggaggcccacgagcggttggcggagctggaggat aaggccgggtcgagccgggagccggacggtcccattgggaacgacggggatgttctgggt gatcccgaggacgcgctggccgagcggctcacgcgacttgtcatcgacagcgagctggag gacccggccatcatgcaggccgtgcacaccagggaccccccgcagcagcctggagggctg aattccagcatctgggacagttcagctgtgctgcggcgcatccgggggccgctcctcgct caggagatgccacccgtgtccgtgctggattatgcccttccccagaggcctctgcaggct cgggatgaggagcgggatccatcggagcgggcgctgccccggcgctcctcgtcccccatc atcggcagccccccggtccgggccgttcccatcggcacccccccgaaacaggccgccatc ccaaacttcaaccagcagatcctgtgtcccaagcctgtccacatccgagctaccatgcag cagcgttatcccactccctatggagagaggatgtcccccaaccagctctgcaatgttccg aattcctccctcctgggccacccgttcccccacagtgtccctcccgttctcacgcacctg cagagagcccagctgcttggaggagcccaggccggccgaatgtcccccagccagtttgcc cgggtgtccgggctggtggggagcccgctgccctccgtgaatcccaagctgctccagggc agagttgggcagatgatgtccacagccggtgggttccgtgcctttttcggggctccccct gccccgcccccctcgcagctgccgcaccctccgggccccggatcccacctgcagaacctg aggccgcagacccagatgttccggccggacacgacccatttgcacccccagcaccgccgg ctcctgcaccagcggcagcagcagaaccggaaccagcaccggagcctcaacggctccggg ggggaccgagggggccaccggagcagccatcaggagcagatccgtaaggatccctatgcc aacctcatgctgcagcgggaaaaggactgggtgtccaagatccagatgatgcagctgcaa agcactgatccctacctggatgattattattatcaggaatgggggattgtcagacaatgc tgggaaaagccagacttggagcagaattacttccagaagctggagaagttggcagcagct gaggaagtgcacggtgatggtcccaagaaggagcgcactaaactcatcaccccacaggtg gccaagctggagcacacctacaagccagtgcagtttgagggctcgctaggaaagctcacc gtctccagtgtcaacaacccccggaagatgatcgacgccgtggtgacgtcccgcagcgag gatgatgagacaaaggagaagcaggtccgggataagaggcgacagaccctcgtcaccatc gagaagacgtacagcctcctcctggacgtggaggactacgagcgccgctacctcctgagc ctggaaggggagcggccagccctgatgggagaaaggaagcagaagatctgtgacatgtac gacaatctgagggggaaggcacctgggcaggacaggccgagcgatgaccacttcatgcag atcatgtgcatccggaaaggaaagcgcctggtggcccggatcctccccttcctggctcca gagcaagcggccgacgtgctcatggccacggccaggaacctgcccttcctcatcaagaag gatgctcaggatgaggtgcttccctgcctcttgaggcccttttcccacgtcctctaccac cttcccttgggaacagtcaccagccttgtgcagcagctcacgaacctacctcagagcgcc gccgctcccaccaacctgcacctcactgctgtgctccaaaacaagtttggtctgtccctg ctgtacctggttctgagccgaggggaggaattgcagagctcagacacaaacacggagctg atgcaggacaaccaatggacagagctgatgctgatggcaacccgggagctcctgcggatc cctcagggagctttggcaaagcccgtgtccatcccctccaacttgatctccctcttctct cgctatgttgaccagcagaagctgaacctgctggagacaaaattgcacttagtgcagggg atccggtag

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