Clavibacter californiensis: FGD68_00385
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Entry
FGD68_00385 CDS
T08592
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccaf
Clavibacter californiensis
Pathway
ccaf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FGD68_00385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaf03021
]
FGD68_00385
03400 DNA repair and recombination proteins [BR:
ccaf03400
]
FGD68_00385
Enzymes [BR:
ccaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FGD68_00385
Transcription machinery [BR:
ccaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FGD68_00385
DNA repair and recombination proteins [BR:
ccaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FGD68_00385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UKF80153
LinkDB
All DBs
Position
complement(66927..70826)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVTTFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSAVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEDARHEDMPGLENELRLEIKTLQDQRDSQIAERLGRLETD
LAALEAEGAKSDQKRRAKDGAEKEMGQTRKAFDEDISRLERVWEEFRSLKVGELKPEDAV
FHELQDRFGIYFEAHMGAEAIQKRLEAFDLEAEGELLREQIATGKGQKKIRAIKRLRVVS
SFLATGNSPAAMVLQVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
GQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTLKEGVAGEGR
AFSSVAEAILAKDQLSLDLNAKVRIRLHDIYFGEGEAPEGVELDEKGKTVGPVLLETTLG
RALFNETLPVDYPYIEAVADKGKLSEIVNDLAERYPKVEVAAALDRIKDAGFYWATRSGV
TVALSDVLTPPTKAAILSGYEKQAAKVQGQFEKGLTTNAERRQELIEIWNKATAEVAKAM
EDNLPADNNINRMVSSGARGNWMQVRQIAGMRGLVSNPKGEIIPRPIVHSYREGLTVAEY
FISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTGRGLDLPIATKGADGS
SVRDSNVENSVYARSLAADAVNEAGEVVAPAGSDVGDVLIDHLIAAGVHEIKVRSVLTCE
SAVGVCAACYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQG
LPRVQELFEARTPKGASPIAEAAGRITIEDTDRSRKVILTPDNGDEPHIYPVLKRATLLV
EDGQHVELGQQLHVGAIDPKEVLRVKGVREVQKHLVGGVQGVYRSQGVPIHDKHIEVIVR
QMLRKVTVVEHGDTDLLPGELVDRARYNEVNRATLTEGKKTASARQEVMGITKASLATES
WLSAASFQETTRVLTQAAMEGKSDPLMGLKENVIIGKLIPAGTGLAKYRDVTVTATEEAK
AERYPNRIFTDESVFNESDLSFVDFDSFSSDDYTPGTYN
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtaacaactttcgatgagctgcggatcggcctggccacggccgacgacatc
cgccgctggtcgcacggtgaggtcaagaagcccgagaccatcaactaccgcacgctgaag
cccgagaaggacggcctcttcggagagcagatcttcggacccagccgcgactgggagtgc
tcctgcggcaagtacaagcgggtgcgcttcaagggcatcgtctgcgagcgctgcggcgtc
gaggtcaccaagtccgcggtccgccgcgagcgcatgggccacatcgagctcgccgcgccc
gtcacgcacatctggtacttcaagggcgtcccgtcgcgcctcggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatggtgatcagcgtggac
gaggatgctcgccacgaggacatgcccggcctcgagaacgagctccggctcgagatcaag
accctgcaggaccagcgcgacagccagatcgccgagcgcctcgggcgcctggagaccgac
ctggccgcactggaggccgagggcgccaagagcgaccagaagcgccgcgcgaaggacggc
gccgagaaggagatgggtcagacgcgcaaggcgttcgacgaggacatctcccgtctcgag
cgagtctgggaggagttccgcagcctcaaggtcggcgagctcaagcccgaggacgccgtc
ttccacgagctgcaggaccgcttcggcatctacttcgaggcccacatgggcgccgaggcg
atccagaagcgcctggaggccttcgacctcgaggccgagggggagctgctccgcgagcag
atcgccaccggcaagggccagaagaagatccgcgccatcaagcgcctgcgcgtcgtcagc
tccttcctcgcgaccggcaactcgccggccgcgatggtgctgcaggtcgtcccggtcatc
ccgcccgagctgcgcccgatggtgcagctcgacggcggccgcttcgcgaccagcgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctccgtcgtctgcttgacctc
ggcgcccccgagatcatcgtcaacaacgagaagcgcatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgtcccgtcacgggtaccggcaaccgcgcgctcaag
tccctcagcgacatgctgaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtggactactcgggccgctcggtcatcatcgtcgggccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctcgagctgttcaagccgttcgtcatcaagcgcctg
atcgacctgagccacgcccagaacatcaaggccgccaagcgcatggtcgagcgcagccgc
ggacaggtctgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctcaaccgc
gcgcccacgctccaccgcctgggcatccaggcgttcgagccccagctcgtggagggcaag
gccatccagctgcacccgctcgtctgcgccgcgttcaacgcggacttcgacggcgaccag
atggccgtccacctgcccctgtcggtcgaggcccaggccgaggcgcgcatcctgatgctc
gcctcgaacaacatcctcaagccgtcggacggacgcccggtcaccctgcccacgcaggac
atgatcatcggcctgcaccacctgaccaccctcaaggagggcgtcgccggtgagggtcgc
gcgttcagctcggtggccgaggccatcctggcgaaggaccagctctcactggacctcaac
gccaaggtgcgcatccgcctgcacgacatctacttcggcgagggcgaggcgcccgagggc
gtcgagctcgacgagaagggcaagacggtcggacccgtgctgctcgagaccaccctcggt
cgcgcgctgttcaacgagaccctgccggtcgactacccctacatcgaggccgtcgccgac
aagggcaagctctccgagatcgtcaacgacctcgccgagcggtaccccaaggtcgaggtc
gcagcagcgctcgaccggatcaaggacgcgggcttctactgggccacgcgctccggcgtc
acggtcgccctctccgacgtgctgaccccgcccaccaaggcggccatcctgtcgggctac
gagaagcaggccgccaaggtccagggccagttcgagaagggactcacgacgaacgccgag
cgtcgtcaggagctcatcgagatctggaacaaggccaccgccgaggtcgcgaaggcgatg
gaggacaacctccccgccgacaacaacatcaaccgcatggtgtcctccggggcacgaggc
aactggatgcaggtccgccagatcgccggcatgcgcggcctcgtgtcgaacccgaagggc
gagatcatcccccgcccgatcgtccactcgtaccgcgagggcctgacggtggcggagtac
ttcatctccacccacggtgctcgcaagggactggccgacaccgcgctccgcaccgccgac
tccgggtacctcacccgtcgtctggtggacgtgtcgcaggacgtcatcatccgcgaggac
gactgcggcacgggccgtgggctcgacctgccgatcgccacgaagggcgccgacggctcg
tccgtccgcgactccaacgtggagaactcggtgtacgcccgctcgctggccgccgacgcg
gtcaacgaggcaggcgaggtcgtcgcccccgcgggcagcgacgtcggcgacgtcctgatc
gaccacctgatcgcggccggcgtgcacgagatcaaggtgcgctcggtcctcacgtgcgag
tccgccgtcggcgtgtgcgcggcctgctacggccgctcgctcgccaccggcaagctcgtg
gacatcggcgaggccgtcggcatcatcgcggcccagtcgatcggcgagcccggcacgcag
ctcacgatgcgcaccttccacacgggtggtgtggcatcggcggacgacatcacgcagggt
ctgccccgcgtgcaggagctcttcgaggcccgcacccccaagggcgcgtcgcccatcgcg
gaggccgcgggtcgcatcacgatcgaggacacggatcgcagccgcaaggtgatcctgacc
ccggacaacggcgacgagccgcacatctacccggtgctcaagcgcgcgaccctcctcgtc
gaggacggccagcacgtcgagctcgggcagcagctgcacgtcggcgccatcgacccgaag
gaggtcctccgggtcaagggcgtgcgcgaggtgcagaagcacctcgtgggcggtgtccag
ggcgtctaccgctcgcagggcgtcccgatccacgacaagcacatcgaggtcatcgtgcgg
cagatgctgcgcaaggtcacggtcgtcgagcacggcgacacggacctcctccccggtgag
ctggtcgaccgggcccgctacaacgaggtcaaccgcgccacgctgacggagggcaagaag
accgcctccgcccgccaggaggtcatgggcatcaccaaggcctcgctcgcgaccgagtcg
tggctgtcggccgcgtccttccaggagacgacccgcgtgctcacgcaggccgccatggag
ggcaagtccgacccgctgatgggcctcaaggagaacgtcatcatcggcaagctgatcccg
gccggcacggggctcgcgaagtaccgcgacgtcaccgtcaccgcgacggaggaggccaag
gccgagcgctacccgaaccgcatcttcacggatgagtcggtgttcaacgagtccgacctg
agcttcgtcgacttcgacagcttcagctcggacgactacacgcccggcacctacaactag
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