Clavibacter californiensis: FGD68_00490
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Entry
FGD68_00490 CDS
T08592
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
ccaf
Clavibacter californiensis
Brite
KEGG Orthology (KO) [BR:
ccaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaf03021
]
FGD68_00490
Transcription machinery [BR:
ccaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FGD68_00490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
KORA
HTH_Crp_2
MarR_2
HTH_38
MarR
HTH_3
HTH_15
UPF0122
DUF7343
YdaS_toxin
Motif
Other DBs
NCBI-ProteinID:
UKF80174
LinkDB
All DBs
Position
94076..95065
Genome browser
AA seq
329 aa
AA seq
DB search
MTATPRTRALAAAPTATCGSSTRGSAATLPRATPLPRPTPLAPDLTAARAEKRRLTHDRF
VRAAAAAEDPAGDAERRRLHDQIVLDHLELADQLARQHSGRAHDWSDLRQVGYLGLVKAA
RRYDPGFGAPFVSFAIPTISGEIKRHLRDNGWVVRPPRQVQELRHALLAVVPALTQRLGR
APTDAELAAHTGHPREEVAEALAAHSSLRPASLDFTVHEDEGISLADTIGADDPGYARAE
RTVLLDAARGVLSDRDRRILHLRFVDECSQSEIAAELGVTQMQVSRLLARILGQLRAELT
RGEAEALPEVAQLAAVSPIRPSEADRRTA
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcaacgccgcgcacgcgcgccctcgccgccgccccgaccgccacgtgcggatcc
tccacccgcggatccgccgcgacgctcccgcgggcgaccccgctcccacgcccgacgccg
ctcgcgcccgacctcacggcggcgcgcgccgagaagcgccggctgacgcacgaccgtttt
gtgcgcgcggccgccgcggcagaggatccggcgggcgacgccgagcgccgccgcctgcac
gaccagatcgtgctcgaccacctcgagctcgccgatcagctcgcccgccagcactccggc
cgcgcgcacgactggagcgacctccgccaggtcggctacctcggcctcgtgaaggccgcg
cgccgctacgacccgggcttcggcgcgccgttcgtgtcgttcgcgatccccaccatctcc
ggcgagatcaagcgccacctccgcgacaacgggtgggtggtccgcccaccccggcaggtg
caggagctgcggcacgcgctgctcgcggtcgtgcccgcgctcacgcagcgcctcggccgc
gcacccaccgacgccgagctcgcggcgcacaccgggcacccgcgcgaggaggtcgccgag
gcgctcgccgcccactccagcctccgacccgcgtcgctcgacttcacggtgcacgaggac
gagggcatctccctcgcggacaccatcggcgccgacgaccccggctacgcgcgcgccgag
cgcacggtgctgctggacgcggcgcgcggcgtgctcagcgatcgcgaccggcggatcctg
cacctgcgcttcgtcgacgagtgcagccagagcgagatcgcggccgagctcggggtgacg
cagatgcaggtgtcgcggctgctcgcgcggatcctcgggcagttgcgcgcggagctgacc
cgcggcgaggcggaggccctgcccgaggtggcgcagctggccgccgtgtcgccgatccgc
ccgagcgaggccgaccgccgcacggcctga
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