Clavibacter californiensis: FGD68_02760
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Entry
FGD68_02760 CDS
T08592
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ccaf
Clavibacter californiensis
Pathway
ccaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FGD68_02760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaf03019
]
FGD68_02760
Messenger RNA biogenesis [BR:
ccaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FGD68_02760
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
YicC-like_C
ODP
Motif
Other DBs
NCBI-ProteinID:
UKF80591
LinkDB
All DBs
Position
complement(515941..517635)
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AA seq
564 aa
AA seq
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MPPTSHAHALDIAKPGRLPRGGLRVTPLGGLGDVGRNMTLFEYEGELLIVDCGVLFPEES
QPGINVILPDFSTLRGRLDKITGIVLTHGHEDHIGGVPYLLQERPDIPVIGSRLTLAFIS
AKLEEHKIKPVTRQVKEGDRITAGKFDLEFVAVNHSIPDGLAVAIRTGAGMVLHTGDFKM
DQFPMDRRLTDLGAFARLGEEGVDLFLTDSTNAEVPGFTTAEKDLTPAIEKVFRTAPKRI
VVSSFASHVHRIQQVLDSAEQYGRKVSFVGRSMVRNMKIASDLGYLRIPKGLVIDLKALN
KLPDDKVTLICTGSQGEPMAALSRMARREHIIEVGEGDTILLASSLIPGNENAIYGVING
LIRWGADVVHKGNAKVHVSGHASAGELVYCYNLVKPRNVLPVHGEWRHLVANAALAESTG
VKNALVIEDGVSVDLVNGRASISGRVPAPYVFVDGMTIGVATEEALEERRTLAAEGQITV
LGIFDEKEQKLIHPAELITRGFVEHDGWIPEAEAAISTALKNAAAKRHLDGVAAERAMSD
GLQRWLQRRHRRTPVVTVIVVDAD
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccacgtcccacgcccacgccctcgacatcgccaagcccgggcgcctgccccgc
ggcggcctgcgggtcacgcccctcggcggtctgggcgacgtcggccgcaacatgacgctg
ttcgagtacgagggcgagctgctcatcgtcgactgcggcgtcctcttccccgaggagagc
cagcccggcatcaacgtgatcctccccgacttcagcaccctgcgtgggcgcctcgacaag
atcacgggcatcgtcctcacgcacggccacgaggaccacatcggcggcgtcccgtacctc
ctgcaggagcggcccgacatccccgtcatcggatcccgcctcacgctcgcgttcatcagc
gcgaagctcgaggagcacaagatcaagcccgtcacccgccaggtgaaggagggcgaccgc
atcaccgcgggcaagttcgacctcgagttcgtcgccgtgaaccactccatccccgacggc
ctcgccgtcgcgatccgcaccggcgccggcatggtcctgcacacgggcgacttcaagatg
gaccagttcccgatggaccgccgcctcaccgacctcggcgcgttcgcacgcctcggcgag
gagggcgtggacctgttcctcaccgactcgaccaacgcggaggtgcccggcttcacgacc
gccgagaaggacctcacgcccgccatcgagaaggtgttccgcacggcgcccaagcgcatc
gtcgtctccagcttcgcgagccacgtgcaccgcatccagcaggtgctcgactcggccgag
cagtacggccgcaaggtctcgttcgtgggccgctcgatggtgcggaacatgaagatcgcc
tccgacctcggctacctgcgcatccccaagggcctcgtcatcgacctcaaggcgctgaac
aagctgccggacgacaaggtcacgctcatctgcacgggttcgcagggcgagccgatggcg
gcgctcagccgcatggcgcgtcgcgagcacatcatcgaggtgggcgagggcgacacgatc
ctcctggccagctcgctcatccccggcaacgagaacgccatctacggcgtgatcaacggc
ctgatccgctggggtgccgacgtcgtgcacaagggcaacgcgaaggtgcacgtctccggc
cacgccagcgccggcgagctcgtctactgctacaacctcgtcaagccccgcaacgtgctg
cccgtgcacggcgagtggcgccacctcgtcgccaacgccgccctggccgagagcacgggc
gtgaagaacgcgctcgtcatcgaggacggcgtgagcgtcgacctggtcaacggccgcgcg
tcgatctccggccgcgtgcccgcgccctacgtcttcgtcgacggaatgaccatcggcgtc
gcgaccgaggaggcgctcgaggagcgccgcacgctcgccgccgaggggcagatcaccgtg
ctcggcatcttcgacgagaaggagcagaagctcatccacccggccgagctcatcacgcgc
ggcttcgtggagcacgacggctggatccccgaggccgaggccgccatcagcaccgccctg
aaaaacgcggccgccaagcgccacctcgacggcgtcgccgccgagcgcgccatgagcgac
ggcctgcagcgctggctccagcgccgccaccgccgcacgccggtggtcacggtgatcgtg
gtggacgcggactag
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