Clavibacter californiensis: FGD68_04950
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Entry
FGD68_04950 CDS
T08592
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
ccaf
Clavibacter californiensis
Pathway
ccaf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ccaf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FGD68_04950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaf03021
]
FGD68_04950
Transcription machinery [BR:
ccaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FGD68_04950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
KORA
HNH_repeat
Motif
Other DBs
NCBI-ProteinID:
UKF81001
LinkDB
All DBs
Position
complement(985235..986278)
Genome browser
AA seq
347 aa
AA seq
DB search
MTMTPTRPTAADTTTDTALDQVESVSPVDPYADSDLPEPSLVTPGASTDAVKDYLRQIGR
VPLLTAELEVSVARRIEVGVLSQEVLDTRTDLTPAERREYQTLAQDGMRAKQHLVNANLR
LVVSIAKRYTGRGLPFLDLIQEGNMGLVRAVEKFDYQAGFKFSTYASWWIKQSITRGMAD
TSRTIRIPVHTVEHINRINAVQRELAVELGRDPSMEEIARESDTPVTKVRYLLDRAQEPM
SLQVLVGGSGGDGDTEMADLIEDADVTQPIDVVTQQLMAAHVTRLIDGLAERDAEVVRMR
FGLAGLEPRSLAFVSQQLGVTRERVRQIEKKVLAKLRIPELETYIRG
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgacaccgacccggcccacggccgcagacaccaccaccgacaccgcgctcgac
caggtcgagtccgtcagccccgtcgatccgtacgcggattccgacctccccgagccctcg
ctcgtcaccccgggcgccagcaccgacgccgtcaaggactacctgcgccagatcggacgc
gtgccgctgctcaccgccgagctggaggtgagcgtcgcccgtcgcatcgaggtgggcgtc
ctgtcgcaggaggtcctcgacacccgcaccgacctcacgcccgccgagcgtcgcgagtac
cagacgctcgcccaggacgggatgcgcgcgaagcagcacctcgtcaacgccaacctgcgg
ctcgtcgtcagcatcgccaagcgctacacgggtcgcggcctgccgttcctggacctcatc
caggaggggaacatgggcctcgtccgcgccgtcgagaagttcgactaccaggccggcttc
aagttctcgacctacgcgtcgtggtggatcaagcagtccatcacccgcggcatggccgac
acgagccgcaccatccggatccccgtgcacacggtcgagcacatcaaccggatcaacgcg
gtgcagcgcgagctcgcggtggagctcggccgcgacccctccatggaggagatcgcacgc
gagtcggacacgcccgtcaccaaggtgcgctacctgctcgaccgcgcgcaggagcccatg
tcgctgcaggtcctcgtgggcggcagcggcggcgacggcgacaccgagatggccgacctc
atcgaggacgcggacgtgacgcagcccatcgacgtggtgacgcagcagctcatggcggcg
cacgtcacgcgcctcatcgacgggctcgccgagcgcgacgccgaggtcgtgcgcatgcgc
ttcgggctggccggcctcgagccccgctcgctcgccttcgtgagccagcagctcggcgtg
acgcgcgagcgcgtgcgccagatcgagaagaaggtgctcgcgaagctccgcatcccggag
ctggagacgtacatccgcggctga
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