Clavibacter californiensis: FGD68_06030
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Entry
FGD68_06030 CDS
T08592
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ccaf
Clavibacter californiensis
Pathway
ccaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FGD68_06030 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaf03019
]
FGD68_06030 (recQ)
03400 DNA repair and recombination proteins [BR:
ccaf03400
]
FGD68_06030 (recQ)
Enzymes [BR:
ccaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FGD68_06030 (recQ)
Messenger RNA biogenesis [BR:
ccaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FGD68_06030 (recQ)
DNA repair and recombination proteins [BR:
ccaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FGD68_06030 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
UKF81209
LinkDB
All DBs
Position
1193102..1194985
Genome browser
AA seq
627 aa
AA seq
DB search
MTSTPPAPAGSAASGTALAPALERLGTVFGYDAFRGDQQEIVEHVIGGGDALVLMPTGGG
KSLCYQIPSLVREGTGVVISPLIALMQDQVDALRAVGVRAAFLNSTQDLETSREVERALL
DGDLDLLYLAPERLILDRMGRLLDEARIALFAIDEAHCVSQWGHDFRKDYLALSMLQERW
PEVPRIALTATANEATHADITARLGLQDARHFVSSFDRPNIRYRIVPKAEPRKQLVDLIK
NEHAGDAGIVYCLSRKTVEQTAEALNKQGITALPYHAGLDAAVRQRNQARFLREDGIVMC
ATIAFGMGIDKPDVRFVAHIDLPKSIEGYYQETGRAGRDGLPSTAWLAYGLQDVVQQRRM
IDQSEGDAQHRRRLSQHLDAMLALCETVGCRRVQLLRYFGEETGPCGNCDTCLEPVETWD
ATVPSQKLLSTIVRLQRERNQRFGAAHLIDILLGNETDRVRQQGHDQLATFGIGGELTDV
QWRGVVRQLLAQGLLGVSDDGYGTLVITAGSGDVLSGSRQVPMRQEPERIVRGRGTRTTR
AKGGQVVDLPEEAQGLFEALRAWRSEQAKEQGVPAYVVFADVTLREVATVRPQDLGQLAG
ITGVGQKKLDTYGEGLLAVVAGSAAAG
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgacctccacccctcccgcacccgccggatccgccgcgtccggcaccgccctggccccc
gccctcgagcgcctcggcacggtcttcgggtacgacgccttccgcggcgaccagcaggag
atcgtggagcacgtcatcggcggcggcgacgcgctggtgctcatgcccacgggtggcggc
aagtcgctctgctaccagatcccgagcctcgtgcgcgagggcacgggcgtcgtcatctcg
ccgctcatcgcgctcatgcaggaccaggtcgacgccctgcgcgccgtcggcgtccgggcc
gcgttcctcaactccacgcaggacctcgagaccagccgcgaggtggagcgcgccctgctc
gacggcgacctcgacctgctctacctcgcgcccgagcgcctcatcctcgaccggatgggc
cggctcctcgacgaggcgcgcatcgcgctgttcgccatcgacgaggcgcactgcgtctcc
cagtggggccacgacttccgcaaggactacctcgcgctgtcgatgctgcaggagcgctgg
ccggaggtgccgcgcatcgccctcaccgcgacggccaacgaggccacgcacgccgacatc
acggcgcgcctcggcctgcaggacgcgcgccacttcgtctcctcattcgaccggccgaac
atccgctaccgcatcgtgcccaaggccgagccgcgcaagcagcttgtcgacctcatcaag
aacgagcacgcgggcgacgccggcatcgtctactgcctgagccgcaagaccgtcgagcag
acggccgaggcgctgaacaagcagggcatcaccgcgctgccgtaccacgcgggcctcgac
gccgccgtccgccagcgcaaccaggcgcgcttcctccgcgaggacggcatcgtgatgtgc
gccaccatcgcgttcggcatgggcatcgacaagcccgacgtgcgcttcgtcgcccacatc
gacctgccgaagtccatcgagggctactaccaggagacgggccgcgcgggccgcgacggc
ctgccctccaccgcatggctcgcgtacggcctgcaggacgtcgtgcagcagcgccgcatg
atcgaccagtccgagggcgacgcgcagcaccgacgtcggctctcgcagcacctcgacgcg
atgctcgcgctgtgcgagaccgtcggctgccgccgcgtgcagctcctccgctacttcggc
gaggagaccggtccctgcggcaactgcgacacgtgcctcgagcccgtcgagacgtgggat
gccacggtgccgtcgcagaagctgctgtccacgatcgtccggctgcagcgcgaacggaac
cagcgcttcggcgcggcgcacctcatcgacatcctgctcggcaacgagaccgaccgcgtc
cgccagcagggccacgaccagctggccacgttcggcatcggcggcgagctcaccgacgtg
cagtggcgcggcgtcgtccgccagctcctcgcccagggcctcctcggcgtgagcgacgac
ggctacggcaccctcgtcatcaccgcgggcagcggcgacgtgctcagcggttcccggcag
gtgcccatgcgccaggagcccgagcgcatcgtgcgcggacgcggcacccgcaccacccgg
gcgaagggcggccaggtggtcgacctccccgaggaggcgcagggcctgttcgaggcgctc
cgggcctggcgctcggagcaggcgaaggagcagggtgtgcccgcctacgtcgtgttcgcc
gacgtcaccctgcgcgaggtcgcgaccgtgcggccgcaggatctggggcagctcgccggc
atcacgggcgtcgggcagaagaagctcgacacgtacggcgaggggctgctcgcggtcgtc
gccggatccgcagcggccggatag
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