Clavibacter californiensis: FGD68_06720
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Entry
FGD68_06720 CDS
T08592
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ccaf
Clavibacter californiensis
Brite
KEGG Orthology (KO) [BR:
ccaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccaf03032
]
FGD68_06720 (topA)
03400 DNA repair and recombination proteins [BR:
ccaf03400
]
FGD68_06720 (topA)
Enzymes [BR:
ccaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FGD68_06720 (topA)
DNA replication proteins [BR:
ccaf03032
]
Prokaryotic type
DNA Topoisomerases
FGD68_06720 (topA)
DNA repair and recombination proteins [BR:
ccaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FGD68_06720 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
UKF81336
LinkDB
All DBs
Position
1361864..1364803
Genome browser
AA seq
979 aa
AA seq
DB search
MPGTKKLVIVESPAKAKTIAQYLGSGYEVQASVGHIRDLIEPKNLPPELKKGTLGKFSVD
VENGFEPYYVVSDQKKKTVADLKRALKDADELFLATDEDREGEAIAWHLLQVLKPKVPVK
RMVFHEITKEAIERARDSTRDIDTALVDAQETRRILDRLYGYEVSPVLWRKVGPGLSAGR
VQSAATRLVVDRERERLAFVTASYWDLTASLSPVDQQLPFDARLVRIDGARIATGRDFDD
KGALKNDSRPLDASSAEALAEALRDPSVPLKVQSVESKPYTRRPAAPFTTSTLQQEAARK
LRFSARQTMSVAQSLYENGYITYMRTDSPSLSQQAINAARKQAAELYGPETVPDKPRLYA
GKSKNAQEAHEAVRPAGETFRTPQQLASTLRGNDHKLYDLIWKRTIASQMADAKGSTASV
VIAAGPTSVGEVAEFAASGTVITFRGFLAAYEESRDEERHGAAEPREAKLPDLKNGQDLR
LVDVDAKGHETSPPPRYTEASLVKTLEELGIGRPSTYAAIISTIVDRGYVTPRGTALVPN
WIAFSVVRLLEEFFTELVQYDFTAGMEDDLDRIAEGSAERVDWLKGFYYGNDAHKGLRPT
IDNLGEIDAKEINSLRIADDITLRIGKYGPYLEVHEEGAAADATPRRVNLPEDLAPDELT
AAKARELIDAPVVTDRVIGINPENGKQVVAKDGRYGPYVTELDPEPEVAPEAPAGGADTA
TGEVLESASAATTAAPAKKAPAKKPAAKKAAAVKPRTASIFKSMDLATVDLETALRLLDL
PRVVGEDPETATPITAQNGKYGPYLKKGTDSRSLTSEEQIFEIDLPGALEVFAQPKYGAR
RPSSALKEFDADPVSGKGIKVKDGRFGPYVTDGETNATIPKSESVEDVDFDRAVELLADK
RAKGPAKPKTKAKAPAKAKAKAPAKAKTTATKSTAAKTSTAKTGTATTTAARSAAATKAA
ATRAANKAAAAAATASDAT
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
gtgcccggcacgaagaagttggtcatcgtcgagtcgccggccaaggccaagacgatcgcc
cagtacctgggcagcggctacgaggtgcaggcctccgtcggccacatccgcgacctcatc
gagccgaagaacctgccgcccgagctgaagaagggcacgctcggcaagttctccgtcgac
gtggagaacggcttcgagccctactacgtcgtcagcgaccagaagaagaagacggtcgcc
gacctcaagcgggcgctcaaggacgccgacgagctcttcctcgcgactgatgaggaccgc
gagggcgaggccatcgcgtggcacctgctgcaggtgctgaagccgaaggtgccggtcaag
cgcatggtgttccacgagatcaccaaggaggccatcgagcgggcccgcgacagcacgcgc
gacatcgacacggccctcgtggacgcccaggagacgcggcgcatcctcgaccgcctctac
ggctacgaggtgtcgcccgtcctctggcgcaaggtggggcccggcctgtccgctggccgc
gtgcagtccgccgcgacgcggctggtcgtggaccgcgagcgcgagcggctggccttcgtc
accgcctcgtactgggatctgacggcgtcgctctcgccggtcgaccagcagctcccgttc
gacgcccgcctcgtccgcatcgacggtgcgcgcatcgccacgggccgcgacttcgacgac
aagggcgcgctcaagaacgactcgcgcccgctcgacgcgagcagcgcggaagcgctcgcc
gaggcgctccgcgacccgtccgtgccgctgaaggtgcagagcgtcgagtcgaagccgtac
acgcgtcgccccgccgcgcccttcaccacgtcgacgctgcagcaggaggcggcgcgcaag
ctccgcttctccgcgcggcagaccatgagcgtcgcgcagtcgctctacgagaacggctac
atcacgtacatgcgcaccgactcgccctcgctctcgcagcaggcgatcaacgcggcgcgc
aagcaggccgcggagctctacgggcccgagaccgtgccggacaagccgcgcctctacgcg
ggcaagagcaagaacgcgcaggaggcccacgaggccgtccggcccgccggggagaccttc
cgcacgccccagcagctcgcatccacgctgcgcggcaacgaccacaagctctacgacctc
atctggaagcgcaccatcgcgtcgcagatggctgacgcgaagggatccaccgcgtcggtc
gtcatcgccgcgggccccacgtccgtgggcgaggtcgccgagttcgccgcctcgggcacg
gtcatcacattccgcgggttcctggccgcgtacgaggagagccgcgacgaggagcgccat
ggtgccgccgagccgcgcgaggccaagctgcccgacctcaagaatggccaggacctgcgc
ctcgtcgacgtcgacgcgaaggggcacgagaccagcccgccgccgcgctacacggaggcg
agcctcgtcaagacgctcgaggagctggggatcggtcgtccgtcgacctatgccgccatc
atctcgacgatcgtcgaccgcggctacgtcacgccgcgcggcacggccctcgtcccgaac
tggatcgccttctcggtggtgcggctgctcgaggagttcttcacggagctcgtgcagtac
gacttcaccgcaggcatggaggacgacctcgaccgcatcgcggagggctcggccgagcgc
gtcgactggctgaagggcttctactacggcaacgacgcgcacaaggggctccgccccacg
atcgacaacctcggcgagatcgacgccaaggagatcaactccctgcgcatcgcggacgac
atcaccctgcgcatcggcaagtacggcccctacctggaggtccacgaggagggtgccgca
gcggacgcgacgccccgccgcgtcaacctgccggaggacctcgcgccggacgagctgacc
gcggccaaggcccgcgagctgatcgacgcgccggtcgtcaccgaccgggtcatcggcatc
aaccccgagaacggcaagcaggtcgtggcgaaggacggtcgttacggcccgtacgtcacc
gagctcgaccccgagcccgaggtggcaccggaggcccccgctggcggtgccgacacggcg
accggcgaggtgctcgagagcgcgtcggcggcgaccacggccgcacccgcgaagaaggcg
cccgccaagaagccggcggcgaagaaggcggcggccgtcaagccgcgcaccgcctccatc
ttcaagtcgatggacctcgcgacggtcgacctcgagacggcgctgcgcctgctcgacctc
ccgcgggtcgtgggcgaggatccggagacggccacccccatcaccgcccagaacggcaag
tacggcccgtacctgaagaagggcacggactcgcgctcgctcacgagcgaggagcagatc
ttcgagatcgacctgcccggtgccctcgaggtcttcgcacagcccaagtacggcgcccgt
cgtccgtcgagcgcgctgaaggagttcgacgcggatcccgtgagcggcaagggcatcaag
gtgaaggacggacgcttcggcccgtacgtcacagacggcgagaccaacgcgacgatcccg
aagagcgagtccgtcgaggacgtcgacttcgaccgtgcggtcgagctgctcgccgacaag
cgcgccaaggggccggcgaagccgaagaccaaggccaaggccccggccaaggcgaaggcc
aaggcacccgcgaaggcgaagacgacggcaacgaagtccaccgcggcgaagacgtccacc
gcgaagaccggcaccgcgacgacgaccgccgcgcgctcggccgccgccacgaaggcggcg
gcgaccagggccgccaacaaggcggccgctgccgcggcgacggcatccgacgcgacgtga
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