Clavibacter californiensis: FGD68_10745
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Entry
FGD68_10745 CDS
T08592
Name
(GenBank) HRDC domain-containing protein
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ccaf
Clavibacter californiensis
Brite
KEGG Orthology (KO) [BR:
ccaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccaf03016
]
FGD68_10745
Enzymes [BR:
ccaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FGD68_10745
Transfer RNA biogenesis [BR:
ccaf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FGD68_10745
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
UKF79274
LinkDB
All DBs
Position
complement(2220583..2222055)
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AA seq
490 aa
AA seq
DB search
MNAPSDIPDPDATGGDAPVPSTPAGLSRPAMGASLFSDVPGSTATDAVVARTRTRARRTA
PDPVPDPAPVVAAAALTETDAPARTPLREAAATGDLTVIDTREEYLRAVEAIAAGTGPIA
VDAERASGFRYSQRAYLIQVFRRGAGTFLFDPPAVGDFSELDTVIRDVEWVLHAASQDLA
CLREVGLDPQRIFDTELASRLLGLPRVGLGTVVEELLGIHLAKEHSAADWSTRPLPRAWL
VYAALDVELLVDVRDEIARRLEEQGKTGIAEQEFAATIAKEAKPARVEPWRRLSGLHGVR
GGRNLAVAKELWEARDAYAREVDTSPGRLVPDGSLVAVARVLPQTKRDLAAVREFSGRAS
RSEIDRWWAAVERGLAATEFPQLRGTGETMPPPKAWADRDPAADRRLKRARVAVQEVATA
MGVPQENLLTPEVLRRVAWTPPDDLAPEAVATALESWGARPWQIEATAAPVAAAFVDADQ
ADDATDDGAS
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgccccgtccgatatccccgaccccgacgcgaccggcggcgacgctcccgtcccc
tcgactcccgccggcctgagccgcccggccatgggcgcgtccctgttctccgacgtgccg
ggatccaccgccaccgacgccgtcgtcgcgcggacgcgcacccgggcgcggcgcacggcg
ccggatcccgtccccgacccggcgcccgtcgtggccgccgccgcgctgacggagaccgac
gcccccgcacgcacgcccctccgcgaggccgccgcgacgggcgacctcaccgtcatcgac
acccgcgaggagtacctgcgggccgtcgaggcgatcgccgcgggcaccggtcccatcgcg
gtcgacgccgagcgcgcatcgggcttccgctacagccagcgtgcgtacctcatacaggtc
ttccgccgtggcgccggcacgttcctcttcgacccgcccgctgtgggcgacttctcggag
ctggacaccgtgatccgcgatgtcgagtgggtgctccacgccgcgagccaggacctcgcc
tgcctccgcgaggtgggcctcgacccgcagcgcatcttcgacaccgagctcgcctcgcgc
ctgctcggactgccccgcgtgggcctcggcacggtcgtcgaggagctgctcgggatccac
ctggccaaggagcactcggccgccgactggtcgacccgcccgctcccccgcgcctggctc
gtctacgccgcgctcgacgtcgagctgctcgtcgacgtgcgcgacgagatcgcgcgccgc
ctcgaggagcagggcaagaccggcatcgccgagcaggagttcgccgcgaccatcgccaag
gaggcgaagcccgcgcgtgtggagccgtggcgtcgtctgagcggcctgcacggcgtccgc
ggcggccgcaacctcgcggtcgcgaaggagctgtgggaggcccgcgacgcctacgcgcgc
gaggtcgacacgagccccggtcgcctcgtccccgacggctcgctcgtcgcggtcgcgcgc
gtcctgccgcagaccaagcgcgacctcgccgcggtgcgcgagttctcgggccgcgcgagc
cgcagcgagatcgaccgctggtgggccgccgtggagcggggcctggccgcgaccgagttc
ccgcagctgcgcggcacgggcgagaccatgccgccgccgaaggcgtgggccgacagggat
cccgccgccgaccgccggctcaagcgcgcccgcgtcgccgtccaggaggtcgcgacggcg
atgggcgtgccgcaggagaacctgctcacgccggaggtcctgcgtcgcgtcgcgtggacg
ccgcccgacgacctcgcgcccgaggccgtcgcgacggccctcgagtcctggggcgcgcgc
ccctggcagatcgaggcgacggccgctccggtggcggcggcctttgtcgatgcagaccaa
gccgacgacgcgaccgacgacggggcctcgtag
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