Chromohalobacter canadensis: SR908_09290
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Entry
SR908_09290 CDS
T09637
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccag
Chromohalobacter canadensis
Pathway
ccag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SR908_09290 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccag03021
]
SR908_09290 (rpoC)
03400 DNA repair and recombination proteins [BR:
ccag03400
]
SR908_09290 (rpoC)
Enzymes [BR:
ccag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SR908_09290 (rpoC)
Transcription machinery [BR:
ccag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SR908_09290 (rpoC)
DNA repair and recombination proteins [BR:
ccag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SR908_09290 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
HSP9_HSP12
Motif
Other DBs
NCBI-ProteinID:
WQH07690
LinkDB
All DBs
Position
1947060..1951277
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLVKVLKSQAQSEEFDAIKITLASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELAAPVAHIWFLKSL
PSRIGLFLDMTLRDIERVLYFESFMVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAVQALLNDVDLEEEIERLREEVPQTNSETKIKKLSKRLKLLEAFYKSGNDPAWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQASGQASTIKAAKKMVERELPEVWDILADVIREHP
VMLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMATNNVLSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMVFSNLDEVERAFGTE
SVSMHARVKVRLTEYERDETSGELNGKTSLRDTTVGRALLFRILPNGMPYELVDQPMKKK
AISGLINAVYRRAGLKDTVIFADQLMYTGFRMATWSGASIGVNDFVIPDSKKEIVDGAEE
EVKEIEDQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMAGISKETVTDRHGEQVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVSQDLVVTEEDCGTYEGLTLHPVIEGGDVIVSLAQRV
LGRVVAQDVIDPTNDDVLIPRGTLLDEAWCAELDTMGVDEIIVRSAITCETRHGVCSSCY
GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQVKHGGTVR
LHNIKHVERNDGKLIVVSRSSALAVADEHGREREYYKLPYGAELSVRDGDMVEGGTPVAK
WDPHTHPVVAEVEGRVQFSDMEEGTTIHRSVDEMTGLSNIEVIETAARPTSGREKRPMIM
LLDDNGEHVTLPGSNTPVQYMLPGKAIISGENGDQVGVGEVIARIPVEASGNKDITGGLP
RVADLFEARKPKEPAILAEVTGTISFGKETKGKRRLTVTPEEGDPVEMLIPKWRQIGVFE
GETVEKGEVISDGPSNPHDILRLLGIAELAKYITVEIQDVYRLQGVVIDDKHIEVIVRQM
LRKVEITDAGDSSFITGDQAEYVRVLEENARLAQEGKFPAKCERLLLGITKASLATESFI
SAASFQETTRVLTEAAVSGKRDYLRGLKENVVVGRLVPAGTGLAHHAERRRKREDDGQTV
NPSASDVEQELGAQLTALDADDEDL
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtcctcaaatcgcaggcacagtccgaagaattcgacgcgatc
aaaatcacgctcgcgtcgccggacttgattcgctcctggtcctacggcgaagtcaaaaag
cctgagaccatcaactaccgtacgttcaagcctgagcgtgatggcctgttctgcgccaag
attttcggtccggtgaaggattacgagtgcttgtgcggtaagtacaagcgcatgaagcat
cgtggcatcatttgcgaaaagtgcggcgtcgaggttactaaggctgccgtacgccgcgag
cgtatggggcatatcgagctggctgcgccggtggcgcatatctggttcctcaagtcgctg
ccgtcacgcatcggcttgttcctggacatgaccttgcgcgatatcgagcgtgtgctctat
ttcgagagcttcatggtcatcgatccaggcatgaccacgcttgagcgcggacagttgctc
aacgatgagcaatacttcgaggcgctggaagagttcggcgacgacttcgatgcccgcatg
ggcgccgaagccgtgcaggcgttgctcaatgatgtcgatctcgaagaagagatcgagcgc
ctgcgcgaagaagtgccgcagaccaactccgaaaccaagatcaagaagctttccaagcgc
ctgaaactgttggaagccttctacaagtccggcaacgacccggcgtggatgatcatggaa
gtgctgccggtacttccgccggatctgcgtccgttggtgccgctggacggcggccgtttc
gcgacctcggatctcaacgatctgtaccgtcgcgtgatcaaccgcaacaaccgcctgaag
cggctgctcgacctcaacgcgccggatatcatcgtgcgtaacgagaagcgcatgctgcag
gaatcggtcgatgcgctgctcgacaacggccgccgcggccgtgccatcaccggctccaac
aagcgtccgttgaagtcgctggccgacatgatcaagggcaagcaggggcgtttccgtcag
aacctgctgggtaagcgtgtcgactattccggccgctcggtgatcaccgtgggtccgacg
ctgcgtctgcaccagtgcggtctgcccaagaagatggcacttgaattgttcaagccgttc
atctactccaagctacaagcgagcggccaggcgtccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgccggaagtgtgggacatcctcgcggatgtcatccgcgagcacccg
gtaatgctcaaccgtgcaccgacgctgcaccgtttgggtattcaggccttcgaaccattg
ttgatcgaaggcaaggcgatccagctccatccgttggtgtgtgcggcgtataacgccgac
ttcgatggcgaccagatggccgtacacgttccgctgacgctggaagcacagctcgaggcg
cggacgctgatgatggccactaacaatgtgctgtcgcccgccaacggcgagcccatcatc
gtgccgtctcaggacgtcgtgttggggctgtattacatgactcgcgagaagatcaatgcc
aagggcgaaggcatggttttctccaacctcgatgaggtcgagcgtgcattcgggactgaa
agcgtgtcgatgcatgcgcgcgtcaaggtgcgcctcaccgaatacgagcgggacgagacc
agcggtgaactgaacggcaagacctcgctgcgcgatacgactgtggggcgtgccttgttg
ttccgcatcctgcccaacgggatgccctacgagttggtcgatcagccgatgaagaagaag
gcgatttccggcttgatcaacgccgtctatcgtcgtgcgggtctcaaggacacggtcatc
ttcgccgaccagctgatgtacaccggcttccgtatggcgacttggtcgggcgcgtcgatc
ggggtcaacgacttcgtcattcccgactcgaagaaagaaatcgtcgacggggccgaggaa
gaggtcaaggaaatcgaggatcagttctcctccggtctagtgactgcgggcgagaagtac
aacaaggtcatcgatatctggtccaaggccaacgataaggtcgccaaggcgatgatggcg
gggatctcgaaggagactgtcaccgaccgtcatggcgagcaggtcgagcaggattcgttc
aatagcgtcttcatcatggccgactctggggcgcgtggtagtgccgcacagatccgccaa
ttggcgggcatgcgcgggctgatggccaagccggatggctcgatcatcgagacgccgatc
accgccaacttccgtgaaggcctgaacgtcctgcagtacttcatctcgacgcacggcgct
cgtaagggtctggcggataccgcactcaagaccgccaactccggttacctgacgcggcgt
ttggtagacgtgtctcaggacctggtggtgaccgaagaggattgcggcacgtatgaaggg
ctgacgctgcatccggtgatcgagggcggtgacgtcatcgtatcgctggcacagcgtgtg
ctgggccgcgtcgtggcgcaggatgtcatcgaccccaccaacgatgatgtattgattccg
cgcggtaccttgctggatgaggcctggtgcgccgagctcgataccatgggcgtggacgag
atcatcgtgcgcagcgctatcacctgcgaaacgcggcatggtgtgtgctcatcatgctat
ggccgtgacttggcacgtggccatcaggtcaacatcggcgaggccgttggtgttatcgcg
gcgcagtcgatcggtgagccgggtacccagctcaccatgcgtaccttccacatcgggggg
gccgcatcgcgtgcttcggccgtcgatagcgttcaggtcaagcacggtggcacggtgcgc
ctgcataacatcaagcacgtcgagcgcaatgacggcaagctcatcgtcgtttctcgctcg
agcgccctagccgtcgccgacgagcatggtcgcgaacgcgagtactacaagttgccgtat
ggtgccgagctgtcggtgcgcgacggtgacatggtcgaaggtgggacaccggtcgccaag
tgggacccgcacacccacccggtcgtggctgaggtcgagggcagagtccagttcagcgac
atggaagaaggcaccactatccaccgcagcgtggatgaaatgaccggcctgtcgaacatc
gaggtgatcgagacggctgcgcggccaacttccggccgtgaaaagcgtccgatgatcatg
ctgctcgacgacaatggtgagcatgtcacactgccgggctccaatacccctgtgcagtac
atgctgcccggcaaggccattatctcaggcgaaaacggcgaccaggtcggagtcggtgag
gtcattgcgcgcatcccggttgaagcgtccggcaacaaggacatcaccggggggctgccg
cgtgtcgccgacttgttcgaggcacgcaagcccaaggagccggcaattctggccgaggtc
accgggaccatcagcttcggcaaggaaaccaagggcaaacggcgcctgacggtcacgcct
gaagaaggtgatccggtcgagatgctgattcccaaatggcgtcagatcggtgtgttcgaa
ggtgagacggtggagaaaggcgaggtcatttccgatggccccagcaatccccatgatatc
ctgcgcctgctcgggatcgcggaattggccaagtacatcacggtcgagatccaggacgtc
tatcgtctgcagggcgtggtcatcgatgacaagcacatcgaggtgatcgtgcgccagatg
ctgcgcaaggtggaaatcaccgatgctggggattcttccttcattaccggcgatcaggcg
gagtacgtccgcgtcctcgaggaaaacgcacgcctggcccaggaaggcaagttcccggcc
aaatgcgagcgtctgctgctgggtatcaccaaggcgagcctggcaaccgagtcgttcatc
tcggccgcgtcgttccaggagaccacccgcgtattgaccgaggcggcggtgtccggcaag
cgcgactacctgcgtggcctcaaggaaaacgtcgtggtgggtcgtctggtaccggccggc
accgggttggcacaccatgccgagcggcgccgcaagcgtgaggatgatggacagacagtc
aatccgtcggcctccgatgtcgaacaggagttgggcgcgcagctcaccgcgctggacgcc
gacgacgaagacctctag
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