Chromohalobacter canadensis: SR908_09565
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Entry
SR908_09565 CDS
T09637
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
ccag
Chromohalobacter canadensis
Brite
KEGG Orthology (KO) [BR:
ccag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccag03021
]
SR908_09565 (rapA)
Transcription machinery [BR:
ccag03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
SR908_09565 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Helicase_RecD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WQH07745
LinkDB
All DBs
Position
complement(1995606..1998548)
Genome browser
AA seq
980 aa
AA seq
DB search
MSEFIPGQRWVSDGEAELGLGTILSCDVRSVTVLFAASQETRTYSVRQAPLTRVVFGAGD
RIEAADGRTLTVDDTKETDGLLVYIVETADGEYDELPESRLADSMRFQQARDRLLTGQVD
RNDWFELRYRTLHHYHRIAQNPANGLAGPRVDLIPHQLYIADEVSRRHAPRVLLADEVGL
GKTIEAGLILHRLLLTGRVERALILVPDSLSHQWLVEMLRRFSLHFTLLDEQQSQHSTGN
PFESAQLVLASQQWLFANPHRQTQAQACDWDLLIVDEAHHLDWSPEASGPGYACVEQLAR
VIDGVLLLTATPEQMGQAGHFARLRLLDPERYTSLEAFAAEEAGYAKVAEAVDALERLPG
DAADRDAVGAVIDDADSQALLETLLDPESDEAQHQSARRQLREQLLDRHGTGRVMFRNSR
RHVAGFPERHLHVTRLTPPSSYRRELRKLDRDMDYLDDLLITTGLDHPEVLLYPDAMYRA
QCDASPGDTALNAEPWWQIDPRVTWLLERLTEVGRDKMLVIAHDRKTASDLSEALRVLGG
LQAPVFHEGMTLIERDRAAAAFTDDEDGCQVLVCSEIGSEGRNFQFCRHLVMFDLPAHPD
QLEQRIGRLDRIGQQHAIEIYVPVFEDSPGERLLRWYDEGMRAFNAPHGIGSELYNAFGD
TVADSLLDNDSLAEVIEETRAYFESRLAEHEAGRDRLLEWNACRPERAQAVTEAIRELDE
DTTLPRYVDKALDVFGVESRDLGNDIQHLLAGPHMLDGLPGLVKGEEGFSATFDRQRALA
RDDVQRLSWEHPLVREMMERILDGTLGNTALALLQHPSIPGGRLMAELVFRTHCPAPRHL
NVGRFLPPTAVRLLLDESGANLTQKVSFGGLAKNLKKVKKAVARDLIKSRHAQLRELLTN
AEGEAENELPSIIEAAQTRMRETLDTELARLKALARHNPAVRDAEIDALAHERQALDTAI
DATRLRLDAVRVIVTVDPPE
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaattcattccgggccagcgctgggtcagcgacggcgaagccgagctggggctg
ggcacgatcctgagctgtgacgtacgaagcgtgaccgttctctttgccgccagccaggaa
acgcgcacctatagcgttcgccaggcgccgctgacccgcgtggtcttcggcgccggcgac
cggatcgaagccgccgacggccgcaccctgaccgtcgacgacaccaaggaaaccgacggg
ttgctggtctatatcgtcgagacggcagacggcgaatacgacgagcttcccgaaagccgc
ctcgccgatagcatgcgctttcagcaagcgcgcgaccgactgctcaccggccaagtcgat
cgcaacgactggttcgaactgcgctatcgcaccctgcaccattatcaccgcatcgcccag
aacccggcgaacggcctggccggaccacgtgtggacctcatcccccaccagctgtacatc
gccgacgaggtctcgcgccgccatgccccgcgcgtactgcttgccgacgaagtgggcctg
ggaaagaccatcgaggccggcctgatactgcatcgcctactgctcaccggacgtgtcgag
cgtgccctgatcctggtacccgacagcctgagccatcaatggctggtggaaatgctgcgc
cgcttctcgctgcatttcacgctactcgacgaacagcaaagccagcacagcaccggcaat
cccttcgaaagtgcccaactggtgctggccagtcaacaatggctgttcgccaatccgcac
cgtcaaactcaggcccaggcctgcgactgggacttactgatcgtcgacgaggcccatcac
ctcgactggagtcccgaggccagcggccccggttatgcctgcgtcgagcagttggcacgc
gtcatcgacggcgtgctgctgctcaccgccacacccgagcagatgggccaagccggccac
ttcgcgcgcctgcgcctgctcgatcccgagcgctacaccagcctggaggccttcgccgcc
gaggaagcggggtacgccaaggtcgccgaggcagtggatgccctcgaacgcctgcccggc
gatgccgcggatcgcgacgccgtgggcgccgtcatcgacgatgcggacagccaggcgctg
ctcgagacgctgctcgaccccgaaagcgatgaggcacagcaccagagcgcccgccgtcaa
ctccgtgagcagttgctcgaccgccacggcaccggccgcgtgatgttccgcaacagccgc
cgccatgtcgccggcttccccgagcgccatttgcacgtcacgcgcctgactccaccgtcc
agctaccgccgcgaactacgcaagctggatcgcgacatggactacctcgacgacctgctg
atcaccaccggactcgaccatcccgaggtgctgctttatccggatgccatgtatcgcgcg
caatgcgatgcctcgccgggcgacaccgcactcaacgccgagccctggtggcaaatagat
ccgcgcgtgacctggctgctggaacgactgaccgaagtgggccgcgacaagatgctggtc
atcgcccacgatcgcaaaaccgccagcgacctcagcgaggcgttacgcgtgctgggcggt
ctccaggcgccggtgttccacgagggcatgacgctcatcgagcgtgaccgggccgcggcg
gcattcaccgacgacgaagacggctgccaggtgctggtgtgctcagaaatcggctccgag
gggcgcaacttccagttctgccggcatctggtgatgttcgatctaccggcgcatcccgat
cagctcgagcagcgtatcggccgcctcgaccgcatcggccagcaacacgccatcgaaatc
tacgtgccggtattcgaagatagccccggcgagcggctgctgcgctggtacgacgaaggc
atgcgtgccttcaacgccccgcatggcatcggcagcgagctttacaatgctttcggcgat
accgtggccgactccctgctcgataacgactccctcgctgaagtcatcgaggaaacacgt
gcctatttcgaaagtcgcctcgctgagcatgaggccggccgcgaccggctgctggaatgg
aatgcttgccgcccggaacgcgcccaggccgtcaccgaggccattcgcgagttggacgaa
gacaccacactgccacgttacgtcgacaaggctctggacgtgttcggcgtcgagagtcgc
gatctgggtaacgatatccagcacctgctggcgggaccgcacatgctcgacggcctgccg
ggactggtcaaaggcgaggaaggcttctcggcgacgtttgatcggcagcgcgccctggcc
cgcgacgacgtgcagcgcctctcctgggaacaccctctggtgcgcgaaatgatggagcgc
atcctcgacggcaccctgggcaataccgcactggcgctgcttcagcacccctcgattccc
ggtggccgactgatggccgagctggtgttccggacccattgtccggcgcctcggcacctg
aatgtcgggcgcttcttgccacccacggcggttcggttgctgctcgacgagtcgggtgcc
aacttgacccagaaggtctcgttcgggggccttgcgaagaacctcaagaaggtcaagaag
gccgtggcacgagatctgatcaagtcgcgccatgcgcaattgcgcgagctgttgaccaac
gccgaaggcgaagccgagaacgagttgccgagcatcatcgaggctgcacagacgcgcatg
cgcgagacgctggacaccgaactggcccgcctcaaggccttggcacgccacaacccggca
gtgcgcgatgcggaaatcgatgccctcgcccacgagcgtcaggcgttggatacggccatc
gatgccacgcggctgcgcctcgatgcggtgcgcgtgatcgtcaccgtcgacccacccgag
taa
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