Chromohalobacter canadensis: SR908_11930
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Entry
SR908_11930 CDS
T09637
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ccag
Chromohalobacter canadensis
Pathway
ccag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SR908_11930 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccag03019
]
SR908_11930 (rnr)
03016 Transfer RNA biogenesis [BR:
ccag03016
]
SR908_11930 (rnr)
Enzymes [BR:
ccag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SR908_11930 (rnr)
Messenger RNA biogenesis [BR:
ccag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SR908_11930 (rnr)
Transfer RNA biogenesis [BR:
ccag03016
]
Prokaryotic type
tRNA degradation factors
SR908_11930 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
WHD_RNase_R
DUF3253
AbiEi_4
Motif
Other DBs
NCBI-ProteinID:
WQH08179
UniProt:
A0ABZ0Y9B0
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All DBs
Position
2517771..2520182
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AA seq
803 aa
AA seq
DB search
MNHWKLSDDPHAEREASKYDNPVPSREYLFARLEEYGKPITPEDLSRMLAVDDEERLEGV
RRRLAAMEREGQILRNRRGAFALIDKLDLIKGRVQGHRDGMGFLIREDGKKPDLVMPPRQ
MRRVFDGDQVLVRVSGRDRRGRDEATIVEVIARNTQSLVGIYRQNTAEFGVLIPEKSRIA
QEVIIPHSASGGARDGQIVLAHITQQPATRVQPVGEVTEVLGERMDPGMEIDIAIRSYEI
PAEFPPEVHAQIADMSASVDEADKQNRIDLRDVPLVTIDDESAKDFDDAVCAWKTKSGSW
KLLVAIADVSHYVRPGSALDQEAITRGTSVYFPGQVVPMLPELLSNGLCSLNPEVDRLAL
VCEMNISPNGAISRYRFYEAVFQSHARLTYNKVAGILDDEGPEGDALREQYRDLVPSLKN
LKSLYTILREAREARGAIDFETTETAIVFNDERKIEKIVPRSRNDAHKIIEECMLAANVA
TARFLDKHDLPALYRIHEKPSPERLDKLRLFLNELGLSLGGGDDPTPQDYRDLAETIKGR
PDADVIQTVMLRSMSRAVYSPQNDGHFGLAYPAYAHFTSPIRRYPDLLVHRAIRSVIRGP
RQTNTVLRAEGAPVEPPSKWAPYSFEQMLELGEHCSMTERRADDATRDVEDWLKCEFMSD
KLGEIFEGTIASVTQFGIFVRLDDVYVEGLVHVTSLPSDYYHYEAEKHRLKGERSGMSYR
LGDGVTVQVARVDLDDRKIDFELADEKPRPQNPARRKKSATGGASARGKQGAGQAGNATK
KEQDGKPRRRSRGGKGGGKGDKR
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgaatcattggaagctcagtgacgatccgcatgcggaacgtgaagcgagtaaatacgat
aatccggtcccgagccgcgaatacttgttcgctcgtctggaagaatacggtaaacccatc
acccccgaagacctcagtcgcatgctggcggtggacgacgaagagcgcctggaaggcgtg
cgtcggcggcttgccgcaatggagcgtgaaggtcagatactacgcaatcggcgcggtgcc
ttcgctctgatcgataagctcgacctcatcaaggggcgggtacagggccaccgtgacggc
atgggcttcttgatccgagaagatggcaagaagcccgacttggtgatgccgccacgccaa
atgcgacgtgtcttcgacggcgaccaggtgctggtgcgtgtcagcggccgtgaccggcgc
gggcgtgatgaagcgaccatcgtcgaggtcatcgcccgcaatactcagtcactggtgggt
atctaccgccagaataccgccgaattcggcgtgctgattcccgagaaatcgcgcatcgcc
caggaagtcatcatcccgcatagcgccagcggtggcgcgcgtgatggacagatcgtcttg
gcgcatatcacccagcagccggcgacgcgcgtacagccggtgggcgaggtcacggaagta
ctcggcgaacgaatggaccccgggatggaaatcgacattgccatccgtagttacgagatt
cccgccgagtttccgcccgaagtgcatgcacagatcgcggacatgtccgcgtccgtggac
gaggccgacaagcagaatcgtatcgacttgcgtgatgtaccgttggtgaccatcgacgat
gagtccgccaaggacttcgacgatgccgtctgtgcctggaagaccaagtccgggagctgg
aagctgctggtggcgattgccgacgtgtcgcactatgtccgcccgggcagtgcgctggac
caggaagcgatcacacgtggcacctcggtttacttccccggtcaggtcgtgccgatgctg
ccggagttgctttcgaacgggctgtgctcgctcaatcccgaggtcgaccgtctggcgctt
gtctgcgagatgaacatctcgccgaacggggcgatcagccgctatcgtttctacgaagcg
gtctttcagtcccatgcgcgcctgacctacaacaaggtcgccggaatcctcgatgacgaa
ggccccgaaggcgatgcactgcgcgagcagtatcgcgacctcgtgccgtcgctcaagaac
ctcaagagcctctacaccatcttgagggaagcccgcgaggcacgcggcgccatcgatttc
gagactaccgagacggctatcgtcttcaatgacgaacgcaagatcgagaagatcgtgccg
cgctcgcgcaacgatgcacacaagatcatcgaagagtgcatgctggccgccaacgtggcg
acggcgcgctttctcgacaagcatgacctgccggcgctgtatcgcattcacgagaagccc
tcgccggaacgcctggacaagttgcgtctgttcctcaacgagctggggctgtccctgggc
gggggcgacgatcccacgccgcaggattatcgtgacctcgccgagacgatcaagggtcgc
cccgacgccgacgtcatccagacggtgatgctgcgttcgatgagtcgcgcggtctattcg
ccgcagaacgatggccacttcggtctggcgtatcctgcctatgcgcatttcacttcgccg
attcggcgctatccggacctactcgtgcatcgcgccattcgctcggtgattcgcgggccg
cggcagaccaatacggtgctgcgtgccgaaggcgcgccggtagagccgcccagcaaatgg
gcaccgtatagcttcgagcaaatgctcgagctcggtgagcattgttcgatgaccgagcgt
cgtgccgacgatgccacgcgtgatgtggaggactggctgaagtgtgagttcatgtcggac
aagctcggtgagatcttcgagggcaccatcgcctcggtgacgcagtttggcattttcgtg
cgccttgatgatgtctatgtcgagggtctggtccacgtgacctcgttgccttccgattat
taccactacgaggccgagaagcaccgtctcaagggtgagcgtagcggcatgtcctatcgg
ctgggcgatggcgtcaccgtgcaggtggcacgtgtcgacctggatgatcgcaagatcgac
tttgagctggccgacgagaaaccgcgtccgcagaacccggcccggcgcaagaaatccgct
accggtggcgcatcggcacgcggtaagcagggcgcagggcaagccggcaacgcgacgaag
aaggagcaggacggtaagccgcgtcggcgttcgcgaggcggtaaaggcggcggtaagggt
gacaagcgttga
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