Chromohalobacter canadensis: SR908_13295
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Entry
SR908_13295 CDS
T09637
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccag
Chromohalobacter canadensis
Pathway
ccag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SR908_13295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccag03019
]
SR908_13295
03009 Ribosome biogenesis [BR:
ccag03009
]
SR908_13295
Enzymes [BR:
ccag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SR908_13295
Messenger RNA biogenesis [BR:
ccag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SR908_13295
Ribosome biogenesis [BR:
ccag03009
]
Prokaryotic type
rRNA helicases
SR908_13295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
DUF6822
Motif
Other DBs
NCBI-ProteinID:
WQH08443
LinkDB
All DBs
Position
2842252..2843964
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AA seq
570 aa
AA seq
DB search
MTTTPAASPTFAELSLPSVLLSTLESLGYETPSLIQGKTIPALLEGRDVLGQAQTGTGKT
AAFALPLLSRLDLKRREPQVLVLAPTRELAQQVAASFVQYGRDLKGLEVLSLCGGQEYRE
QLSGLRRGAQVIVGTPGRVIDHLNRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDT
PKEAQRVFFSATLPAEISRIVNHYLVDPLRIMIETKTKTAEGIEQRLVRIEGGAKLEALS
RLLEVEPVDAAIAFVRTRAACTTLVEQLLARGVNAAALSGDLDQSLRERTVDRLKRGKVD
VLIATDVAARGLDVPRITHVFNYDLPQDGEAYTHRIGRTGRAGRKGVAITFAGGREQRRV
RDMERVTGQPMQEVELPDESVIRAHRDKLFRERVLKTLEQGSDYQRELIEGLADDGYDPV
DLACAMASMARSGEAPIGRLPKPGERRPARQGGGRDEKPNRRDRGPSAGMTRYRVSVGHK
DGVKPGQLVGALANEGGIDGGKIGRIDIRNAFSVVELPSTLPTAVLSRIGQARVAGRPLE
IAEDHGSAERAPRRQREDGDAAPQKNRSQA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgactcccgctgcctcgccgactttcgccgagctttcgctgccgtccgttctt
ctttctacgctcgaatcactgggatatgagacgccctcactgattcagggtaaaaccatt
cccgcgctacttgaagggcgcgatgtgctgggtcaggcccagaccggtacgggcaagacc
gctgcctttgccttgccgctgttgtcgcgtcttgacctcaagcgtcgcgagccgcaggtg
ctggtgcttgcgccgacgcgtgagctggcccagcaggttgccgcttctttcgtccagtac
ggccgtgatctcaagggacttgaggttctcagcctatgtggcggccaagaatatcgcgaa
cagctcagcggattgcgccgtggcgcccaggtcatcgtgggcacgccgggacgcgtgatc
gaccacctcaaccgtggcagcctcaaactcgacggcctcaatgcgttggtactcgacgaa
gccgacgaaatgctgcgcatgggcttcatcgatgacgtcaagcgtgtggtctccgatacg
ccgaaagaggcgcagcgtgtcttcttctctgcgaccttgcccgctgaaatctcgcgtatc
gtcaatcattacctggtcgatccgctcaggatcatgatcgagaccaagactaagacggcc
gaaggcatcgagcagcgcttggttcgtatcgaaggtggcgccaagctggaggcgctctcg
cgcttgctcgaggttgagccggtggatgccgccatcgccttcgtgcgcacacgtgctgct
tgcaccacgctggtcgagcagttgttggcgcgcggcgtgaacgcggcggcgttgtccggt
gacctggatcaaagcctgcgcgagcggaccgtcgatcgcctcaagcgtggcaaggtcgat
gtcctcatcgccaccgatgtcgctgcgcgtggtctcgacgtgccgcgtatcacccacgtg
ttcaactacgacctgccgcaagacggcgaggcgtatactcaccgcatcgggcggacgggg
cgcgctggacgcaagggcgtggcgatcaccttcgcaggtggccgcgagcagcgccgcgtg
cgtgatatggagcgtgtgaccggtcagccgatgcaggaagtcgagttgcccgatgaatct
gtcattcgtgcccatcgcgacaaactgttccgtgagcgtgtgctgaagacgctggagcaa
ggcagcgactatcagcgtgagctgatcgaaggcttggccgatgacggttatgatcccgtg
gacctggcttgtgcaatggccagcatggcgcgttccggcgaggcccccatcggtcgcttg
ccgaagccgggcgaacgtcgtcccgctcgtcagggtggtggtcgcgatgaaaagcccaac
cgccgtgatcgtggcccgagcgctggcatgacgcgttatcgcgtatcagtggggcacaag
gatggcgtcaagcccggccagttggtaggtgcattggccaatgaaggcggtatcgacggt
ggcaagatcggccgtatcgacatccgtaacgccttctccgtggtcgaattgccgagtacg
ctgccgactgccgtgctgtcacgcatcggtcaggcgcgtgtcgccggccgtccgctggag
attgccgaggatcacggctcggcggagcgtgctccgcggcgccaacgtgaagacggcgac
gctgctccccagaagaaccgttcgcaggcgtga
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