Chromohalobacter canadensis: SR908_13460
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Entry
SR908_13460 CDS
T09637
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ccag
Chromohalobacter canadensis
Pathway
ccag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SR908_13460 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccag03400
]
SR908_13460 (recB)
Enzymes [BR:
ccag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SR908_13460 (recB)
DNA repair and recombination proteins [BR:
ccag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SR908_13460 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WQH08475
LinkDB
All DBs
Position
2884363..2888127
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AA seq
1254 aa
AA seq
DB search
MTTFDDAPVAQPQPQPLVLEHLPLAGHHLIEASAGTGKTFTLAALYVRLVLGPLPGREAC
DYPRPLLPPEILVVTFTEAATAELRGRIRARLKDARDWLLATPGARHDDVLDALLAPLIE
AGQTAVASAAKRLDQAARLMDEAAIFTIHGFCQRMLTRHAFDAGARFGAELLQDGSTLLT
RVVEDYWRCHFYPLAAHWQREIRRRWEGPEALSQALQPLLKDARPQPLWWDGERVEAPAS
LTALLGDAERALAARQALEDALRQAWDREAIASCLNDAFSRGALNKNSYKPDELDTRLAA
FEQWLATFEADDGTTDSQGRFWLSQAKLEKGTKKGHDVPSHPFFARLDELAETATPFDVL
APRLLAHARDTVAAMFAAEKRRQGLWEFGDLLRDLDTALDPETAPEAAWRLAGRIRQALP
VALIDEFQDTDPLQYRIFSRIYRAPQADADTTTLLMIGDPKQAIYAFRGADIDTYLAARR
ETPSRFTLKRNFRSSVAMVEAVNRLFARHPSPFGSDEIPFVEVAAKGQKTRLCDADGQDV
AALGAWWPGDERHTKADYQASMASAARAEVQRALEGGWHFADDDGTQRDVRPADIAILVR
KGSEALAVRRALAEGGIRSVYLSERASVFDTALAFELLQLFEAVAQPRQDARLKAALATR
LLNDTPAALEALLADELAWEREVERFADYHRQWQRRGVLPMLRAVMRDFRVAERMGARDD
GERALTDLLHLGELAQTVSARLDGEHALLRWWHRALVEGTQQLDAEAVSQRLESDEDLVK
VVTIHKAKGLEYPIVLLPFVCDYRPAEPERGSGLLEWRDPQHGRAMVHGADDEQLAAVER
ARLDEDVRLLYVALTRAAHACRLGVAHLGRGRGTSGCLHETALGRLLGCQADDQGHDLHE
RLTAALSVEAIPVPPAHRLRVRHALPPVAPARRFSGGIDDDWWIASYSALIVDARLEPAG
EEASMTWDASATLDVEVSRERDPVPRPAARTLRDFPRGPRPGTFLHGLLEAVDLDRLREP
AYRDELQRLVSTRLHLGGFESEWAPLLLDWLCTALPTPFPGHAGAEIRLDGLAAWRPELE
FWLPAHQAWSAPLDALVCAFEPLPEPRPRLAPRKLNGMLKGFIDLVFEAEDGRWYVLDWK
SNHLGDAPADYHPETLAEAMVEHRYDLQYVLYVLALHRLLVARLDDYDYDTHMGGACYLF
LRGVDGTPGQGVFQRRPERRLIEALDAWLDGDTGPVEALRDAHGIASASQGVTS
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgttcgatgacgccccggtggcgcagccccagccccagccgctggtgctcgag
catctgccgttggccggtcaccacctgatcgaggcgagtgcggggaccggcaagaccttt
accctggcggcgctctacgtgcgtctggtgctcggtccgttgccgggccgcgaggcgtgt
gactatccgcgtccgctgttgccgccggaaatcctcgtggtgacgttcaccgaagccgcc
accgccgaattgcgcgggcgcattcgcgcgcgtctcaaggatgctcgcgactggttgctg
gccacgcccggggcacgccacgacgacgtgctcgatgccttgctcgcgccattgatcgag
gccgggcagaccgccgtggcaagcgccgccaagcgcctcgaccaagcggcccggctgatg
gatgaagcggccatcttcaccattcacggtttctgtcagcggatgctgacccgtcatgcc
ttcgatgccggcgcgcgcttcggtgccgagctgctgcaagatggctcgaccttgctgacg
cgggtggtggaggattactggcgttgtcatttctatccgctcgccgcgcattggcagcgc
gagattcgccgccgttgggaaggcccggaagcgctcagccaggcattgcagccactgctc
aaggacgcacggccgcaacccctgtggtgggacggcgagcgtgtcgaggcgcccgcgtcg
ttgacggcattgctgggcgacgccgagcgcgcgctggcggcacgccaggcgctggaggac
gcgttgcgccaagcctgggatcgcgaggccatcgccagttgcctgaacgatgccttctcg
cgcggcgcgctcaacaagaatagctacaagccggacgaactcgatacgcgtctggcggcg
ttcgagcaatggttggcgaccttcgaggccgatgacggcacgaccgacagtcagggccgc
ttctggttgagtcaggccaagctcgagaagggtaccaagaaaggccatgacgtgccctcg
cacccgttcttcgcccggttggacgaactggcggagactgcgacacccttcgatgtcttg
gcgcctcgattgctggcccatgcacgcgatactgtggcggcgatgttcgccgccgagaag
cgtcgccagggattatgggagttcggcgacctgttgcgtgacctggataccgcgcttgac
cccgaaacggcgccggaggcggcctggcggctggcggggcgcattcgccaggccctgccg
gtggcgctgatcgacgaattccaggataccgacccgctgcagtaccgcatcttctcgcgt
atttatcgcgcgccccaggctgatgccgacaccaccacattattgatgatcggcgatccc
aagcaggcgatttatgcctttcgcggcgccgacatcgatacctatctggcggcgcgccgc
gagacgcccagtcgtttcaccctgaagcgcaacttccgctccagcgtggccatggtcgag
gcggtcaatcgcctgttcgcgcgtcatccctcgccgtttggcagtgacgaaattcccttc
gtcgaggtcgcggccaaggggcagaagacgcgtctttgcgacgccgatggacaggacgtg
gcggcgctgggcgcctggtggccgggggacgaacgccataccaaggccgactatcaagcg
agcatggccagtgccgcgcgggccgaggtgcaacgggcgctcgagggtggctggcatttc
gccgatgacgatggcacgcaacgcgacgtacgccccgcggatatcgcgatcctggtacgc
aaggggagcgaagcgctggccgtgcgccgcgcgctggccgagggcggcattcgcagcgtg
tatctcagcgaacgcgccagtgtcttcgataccgcgctggccttcgaacttttacagctc
ttcgaggcggtggcgcaaccgcgccaggacgcacgcctgaaggctgccttggcgacgcgg
ttgctcaacgacacgccggcggcgctggaggccttgctcgccgacgaactggcctgggag
cgcgaggtcgagcgtttcgccgactatcaccgccagtggcagcggcgcggcgtgctgccc
atgctacgcgcggtgatgcgtgattttcgcgtggccgagcgcatgggggcgcgcgacgac
ggcgagcgagcgcttaccgacctgctgcatctcggggagctggcgcagacggtgtcggcg
cgtctcgacggcgagcatgcgttgctgcgctggtggcatcgtgcgctcgtcgaaggcacc
cagcaactcgatgccgaggcggtcagccagcgcctggaaagcgacgaggacctggtcaag
gtggtcaccatccacaaggccaaggggctcgagtaccccatcgtgctgttgccgttcgtg
tgcgattaccgcccggcggagccggagcgaggctccgggctgctcgaatggcgcgaccct
cagcatggccgcgcgatggtgcatggcgccgatgatgagcagttggccgccgtcgagcgt
gcccggctggatgaagacgtgcggcttctctacgtggcgttgacgcgagccgcgcacgcc
tgccgcctgggggtggcccacctgggacgagggcgcggcaccagtggctgcctgcacgag
acggcactgggtcgactgctcggctgccaggccgatgaccagggtcatgatctgcacgaa
cgtctcacggcggcgttgagcgtcgaggcgatccccgtgccgcctgcgcatcgcttgcgt
gtccgccacgccttgccgcccgtggcgccggcgcgccgcttcagcggcggtattgacgac
gattggtggatcgcctcgtactcggcgctgatcgtcgacgcccgtctcgagccggcgggc
gaggaggcctcgatgacgtgggacgcctcggcgaccctggatgttgaggtcagccgcgag
cgcgatccagtgccacgccccgcggcgcgcacactgcgcgacttcccccgtggtccgcgt
cccggcaccttcttgcacggcttgctggaagcggtggatctcgaccgcctgcgcgagccg
gcctatcgtgacgagctgcaacgtctggtcagcacgcgcttgcatctggggggattcgag
tccgaatgggcgccgctgctgctcgactggttgtgcacggcattgccgacgccttttccg
ggccatgcaggggccgagattcgtctcgacggcttggcggcctggcgccccgagttggag
ttctggctgcctgcccatcaggcgtggagcgcgccgctcgacgccttggtgtgtgccttc
gagcccttgcccgagccgcgtccccggctggcaccacgcaagctcaacggcatgctcaag
gggttcatcgacctggtgttcgaagccgaggacggtcgctggtacgtcctcgattggaaa
tccaaccacctgggcgacgcgccggcggattatcatcccgagacgttggccgaggcgatg
gtcgagcatcgttatgacctgcagtacgtactgtacgtgctggcgttgcatcgcctgctg
gtggcgcgtctcgacgattacgattacgacacccacatggggggcgcctgttacctgttt
ctgcgcggcgtggatggcaccccggggcagggcgtgttccaacgccgtcccgagcgccgc
ctgatcgaagcgctggatgcttggctggatggcgacacgggccccgtcgaggccttgcgc
gacgctcatgggatagcctcggcctcacagggagtgacgtcatga
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