Chromohalobacter canadensis: SR908_14675
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Entry
SR908_14675 CDS
T09637
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ccag
Chromohalobacter canadensis
Brite
KEGG Orthology (KO) [BR:
ccag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccag03019
]
SR908_14675 (hrpA)
Enzymes [BR:
ccag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SR908_14675 (hrpA)
Messenger RNA biogenesis [BR:
ccag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SR908_14675 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
WHD_HA2
nSTAND3
AAA_19
T2SSE
AAA_25
nSTAND_NTPase5
NACHT
SRP54
Flavi_DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WQH08701
UniProt:
A0ABZ0Y9F6
LinkDB
All DBs
Position
3151191..3155183
Genome browser
AA seq
1330 aa
AA seq
DB search
MSTTPTSDSHDQLAQLRAQLDDCLLRDAHDQGRRLDKLAGRARGGKPIDRSLREIETRLA
RSREALAARRAQPLTLNYPEHLPVAERRDDLLAALDEHQIVVVAGETGSGKTTQLPKLCL
ELGLGRRGLIGHTQPRRLAARTVATRLAEELEVPLGSQVGYQVRFTDQTDERTLVKLMTD
GILLAETQNDPDLMRYEAIIIDEAHERSLNIDFLLGYLKRLTERRPDLKIIITSATIDVE
RFSQHFGREGKPAPVVEVSGRTYPVDVFYRPLVRDADDEEDRSLQEGILHAVEEIEAIER
ERRWFSGPRDVLIFLPGEREIRETADTLRRADLRGTEILPLYARLSNAEQNRVFQSHTGR
RIVLATNVAETSLTVPGIRYVIDPGLVRMSRYSYRAKVQRLPIEPVSQASADQRKGRCGR
ISEGVCIRLYSEEDFLARPTYTEPEIQRTNLASVILSMLALKLGDIEAFPFVDVPDSRFV
KDGYRLLYELGAVGAVGADNRLSELGRRLARLPIDPRLARMVLAGAEQGSLRETLIVVSA
LAAQDPRDRPADKRQAADQQHRQWQDSESDFMAWLNLWHGVEHARETLSGNQLRRWCRDN
YLSYLRLREWHDTFRQLKQLTRDMGLESSSAVLPPKEDAPATAHPRVDSERLHKALLSGL
LSHLGTLQENREYLGARNRKFMIHPGSGLAKKTPKWVMAGELVETSRLYARDVARIQPAW
VEPMAEHLIKRSHSEPHWEMKRGQVVAFEQVTLFGLPIVTGRRVDYAKVAPAEAREIFIR
RALVEGEYRSQADFFQHNRALIDDVEELEDRARKRDILVDEETLFAFYDARLPADVAGAR
SFERWRKKAEREAPDVLKLDRDTLMARDAEEITQEAYPDVLVHNGVRYPLSYHFAPRQPD
DGVTLTVPAAMLSQLPEGRLEWLVPGLLREKCIALLKTLPKAIRRQVVPIPDWVDAALAT
LVPDERPLTEALGEFLRRRTGVRLGPDDWHTEALEAHLVMNLRVVDHDGKVLGEGRDLGV
LKQRFDEAASQGAKALAASGPTAEALDELPAQAIPESRSTQQAGIRVEAYPALVDQGESL
AIESFDHPDKAHAVHRHGVKRAAMLRLPEQVRYLARELKGVDRCALLFAKVGSKQQLVDD
LIEAVFLQVVAVDPLPRDRQALEARIEVTRGELVAHAESLVATLQKALEGHLEVTKALKG
NLNLSLALVYSDLKAQMGRLVYPGFISDAEAWLEQYPRYMQAALIRLEKAPRERNRDQAA
MQQVHEFEERLHARLEADRREGRRDPRFIEFGWWIEELRVSLFAQQLGTLAPVSDKRLER
RWAELTGRQQ
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
ttgagcacgacaccgacgagcgattcccacgatcaattggcgcaactgcgcgcgcaactc
gacgactgcctgctgcgtgatgctcacgatcaagggaggcgtctcgacaagctggcagga
cgcgcgcgcggcggcaagcccatcgaccgttcgctgcgcgagatcgagacgcgtctggcg
cgctcgcgcgaggccttggcggcgcggcgtgcccagccgctgacgctgaattatcccgag
catctgcccgtggccgagcggcgcgacgatctgctggcagcgctcgacgagcaccagatc
gtcgtggtggccggtgaaaccggctcgggcaagacgacccagttacccaagctgtgcctc
gagctgggactgggacggcgtggcctgatcggccatacgcagccacggcgtctggcggcg
cgaaccgtcgccacgcgcctcgccgaagaactggaagtaccgctggggtcgcaggtcggc
taccaggtgcgtttcaccgaccagaccgatgagcgcactctcgtcaagctgatgaccgac
ggcatcctgctcgccgagacgcagaacgacccggacctgatgcgctacgaagcgatcatc
atcgacgaggcccacgagcgcagcctcaacatcgacttcctgctcggttatctcaagcgt
ctgaccgaacgacgcccggatctcaagatcatcattacgtcggcgaccattgacgttgaa
cgcttcagccagcacttcgggcgtgaaggaaaaccggcgccggtggtcgaggtgtcgggg
cgcacctacccggtggatgtgttctatcggccgctggtccgtgatgccgacgacgaggaa
gaccgctccttgcaggaagggattctgcatgcggtggaagagatcgaggccatcgagcgc
gaacgacgctggttcagcggcccgcgtgacgtgctgatctttctgcccggcgagcgggaa
atccgcgagacggcggataccttgcggcgtgccgatctccggggcaccgagatcctgccg
ctctatgcgcgactttccaatgccgagcagaatcgcgtgttccagtcgcacaccgggcgt
cgcatcgtgctggccaccaacgtcgctgaaacctcgctgaccgtgccgggcatccgctat
gtcatcgatcctggcctggtgcgcatgagccgttacagctaccgcgccaaggtccagcgc
ctgcccatcgagccggtcagtcaggccagtgccgatcagcgcaaggggcgctgcgggcgt
atcagcgagggcgtgtgtattcgcctctacagtgaggaagatttcctggcgcggccgact
tacaccgaacccgagatccagcgcaccaatctggcctcggtgatcttgtcgatgctggcg
ctcaagctcggcgatatcgaggcgttccccttcgtcgacgtgccggattcgcgcttcgtc
aaggacggttatcgtctgctctatgagctgggggccgtgggggccgtgggggccgacaat
cgcttgagcgagctggggcggcgtctggcacgcttgcccatcgacccacgcctggcacgc
atggtgctggccggcgccgagcagggcagcctgcgcgaaacattgatcgtggtcagcgcg
ttggccgcccaagacccgcgtgaccgtcccgccgacaagcgccaggccgccgaccagcaa
catcgccaatggcaggattctgagtccgacttcatggcctggctgaatctctggcatggc
gtcgaacatgcgcgcgagaccttgtccggcaaccagctacgacgttggtgccgtgacaat
tatctgagttatctgcgactacgcgagtggcacgataccttccgccagctcaagcaactg
acccgcgacatggggctcgagtcctccagtgcggtgctgccgcccaaggaagacgcccct
gcgacggcgcatcctcgtgtcgacagtgaacgcctgcacaaggcgttgctctcggggttg
ctctcgcatctggggacgctgcaggaaaatcgcgagtatctgggtgcgcgcaatcgcaag
ttcatgattcatcccggctcggggctggccaagaagacgcccaagtgggtcatggccggc
gagctggtggaaacctcgcgactctatgcgcgtgacgtggcgcgcatacagccggcctgg
gtagagcccatggccgagcatctgatcaagcgcagccatagcgagccgcattgggaaatg
aagcgcggtcaggtcgtcgccttcgagcaggtcacgctgttcggcctgcccatcgtcact
gggcggcgcgtcgactatgccaaggtggcgccggcagaggcgcgcgaaatattcatccgc
cgcgccctggtggaaggcgagtatcgcagccaggccgatttcttccagcataatcgcgcc
ttgatcgacgacgtcgaggaactcgaggaccgcgcccgcaagcgcgatattctggtcgac
gaggagacgctgttcgctttctacgatgcgcgcttgccggcggatgtcgcgggtgcccgt
agcttcgagcgctggcgcaagaaagccgagcgcgaggcgcccgatgtgctcaagctcgat
cgcgacacgctgatggcgcgcgacgccgaggagatcacgcaggaagcctatcccgatgtg
ttggtacacaatggcgtgcgttacccgctcagctatcattttgcacccaggcaacccgac
gacggtgtgaccttgacggtgccggcggcgatgctgtcgcaactgcccgaaggacgcctc
gaatggctggtgccggggctcttgcgcgagaagtgtatcgcgctgctcaagacgctgccc
aaggcgattcgccgccaggtggtgccgattcccgactgggtggatgccgccctggcaacg
ctggtgcccgatgagcgcccgctgaccgaggcgctgggcgagttcctgcgtcgacgcacc
ggcgtgcgcttggggcccgatgactggcataccgaggccctcgaggcgcatctggtcatg
aatctgcgcgtggtcgatcatgacggcaaggtgcttggtgaagggcgtgacttgggcgtc
ctcaagcagcgtttcgatgaggcggcaagtcaaggcgcgaaggccctggcggcgagtggg
ccgacggctgaggcgctggacgagttgccggcacaggcgatccccgaatcgcgttccaca
caacaggcggggattcgcgtcgaggcctatccggcattggtcgatcagggcgagagtctg
gctattgaatccttcgatcatccagacaaggcacacgcggtgcatcgtcatggggtcaag
cgcgcagcgatgctgcgcctgcccgagcaggtgcgctatcttgcccgcgagctcaagggc
gttgaccgctgtgcgttgctgttcgccaaggtggggagtaagcaacaactcgtcgacgac
ctgatcgaggcggtcttcctgcaagttgtcgccgtggatccgttgccgcgtgatcgccag
gccctggaggcgcgcatcgaggtaacgcggggcgaactcgtcgcgcatgccgaatccctg
gttgcgactctccagaaagccctggaagggcatctggaagtgaccaaggcgctcaagggc
aacctcaatttgtccttggccttggtctacagtgatttgaaagcccagatgggacgtctg
gtgtatcccggctttatcagcgacgccgaggcctggctcgagcagtatccgcgctacatg
caagcagcgctgatccggctcgaaaaggcgccgcgtgaacgcaaccgtgaccaggccgcg
atgcagcaggtgcatgaattcgaggagcgcctgcatgcgcgcctcgaggccgatcggcgc
gagggacgtcgtgacccacgtttcatcgagttcggctggtggatcgaggagttgcgggtg
tcgttgttcgcccagcagctcggcaccttggcgccggtctcggacaagcgcctcgaacgt
cgctgggcggaactgacgggacgtcagcagtga
DBGET
integrated database retrieval system
