Chromohalobacter canadensis: SR908_15330
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Entry
SR908_15330 CDS
T09637
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ccag
Chromohalobacter canadensis
Pathway
ccag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SR908_15330 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccag03019
]
SR908_15330 (rne)
03009 Ribosome biogenesis [BR:
ccag03009
]
SR908_15330 (rne)
Enzymes [BR:
ccag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SR908_15330 (rne)
Messenger RNA biogenesis [BR:
ccag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SR908_15330 (rne)
Ribosome biogenesis [BR:
ccag03009
]
Prokaryotic type
rRNA processing factors
SR908_15330 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WQH08822
LinkDB
All DBs
Position
complement(3300292..3303765)
Genome browser
AA seq
1157 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGRITRIEPSLEAAFVDF
GAERHGFLPLKEISREYFTKEPSGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGDDRAQLKDAMGQLTVPDKMGVIVRTAGIGRSPEELQW
DMDYLVQVWEAITEEAGKRSAPFLIYRESNVIIRAMRDYLRHDIGEVLIDSPEVHEEALH
FIRQVMPSYQNKIKLYADDVPLFSRFQIESQIETAYQREVKLPSGGAVVIDHTEALVSID
INSARATRGSDIEETALQTNLEASDEIARQLRLRDIGGLVVIDFIDMTPAKNQREVENRV
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSISLSI
MRLIEEEAMKERSSQIRAVLPVPVATYLLNEKRSVLNDIEQRQGVQVVLLPNPDMDTPHY
DMQRLRDDQVNEEDGQRSSFELPTETELTQEPDPALEKPVQRAEAAVKSIAHNAPAPTSL
QSDAEPQGKSSTATTPATAPEGGLFSRMVKGLGKLLNGDESAASPQETASGAESPKRAAS
TSSTADSSQRRNRNGNSQAERSDDQKTANKQQRQTSRDNDDTRRDTASSGGNNASNNARN
GNGNNRRRRNGEESQERQASRNENRREDSNNSQSNRNSRPSRGSGKSNNAERSENASNSE
SPKQDTRNGGKSNKPRAENKDTKANKPKSESASQATPDDKASASPAQGETPKADSKPKRT
RNNPRRRSRKHAVNPQSVAEQEKLQAQQQEAASEPAQDVQEGSASAAPAKPSADKASATP
SEAASSAVTETTPEAATSPSETQPRTGTDDSAQADESRKKAATSSRPTEAPAENSATEAP
AENGTTEAPQDVAAQTPEADSTERPAAQATPEDATADDSAQAPADGSSQVPADDSPAQAP
TQTAPEDAGETAEAAPKETDSKEESGTASQAEQHVPQASDVPVESEQSAPSTPSKPLAAQ
ASDDKPANDDVTPSSQPEDDNVAATDKPAATTSADNAEAQAGSASTPTPKPAPEVETPAS
TDAPASTEEASATPAEAPAPTATPRAEEASAPAATTTVASQAPQESATPRQRRRAHNDPR
EQRHRLQENLFRGDDNA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatgctcatcaatgcgacacagcccgaagagctgcgcgtcgcgctcgtcgat
ggacaacgcctgtacgacctggacatcgaatccggtgcccgggaacagaaaaaagccaac
atctaccgtggccgcatcacgcgcatcgagcccagtctcgaggcagccttcgtcgatttc
ggtgccgaacggcacggtttcctcccgctcaaggaaatttcgcgggaatacttcactaaa
gaaccttccgggcgtcctaatatcaaggaagtgctcaaggaaggtcaggaagtcatcgtc
caggtcgacaaggaagaacgcggcaacaaaggcgccgcgctgaccaccttcatcagcctg
gccggtcgcttcctcgtactgatgcccaacaacccccgcgccggcggcatctcacggcgc
atcgagggtgacgaccgcgcgcagctcaaggacgccatgggccagctcaccgttcccgat
aagatgggcgtcatcgtgcgcaccgccgggatcgggcgttcccccgaggaactccagtgg
gacatggattacctcgtgcaggtatgggaagcgattaccgaggaagccggcaaacgtagc
gcgcccttcctcatctatcgcgagtccaacgtcatcattcgcgccatgcgcgattacctg
cgccatgatatcggcgaagtcttgatcgacagccccgaggtacacgaggaagccctgcat
ttcatccgccaggtcatgccctcctaccagaacaagatcaagctctacgccgacgacgtt
ccgctgttctcgcgcttccagatcgaatcgcagatcgagaccgcctatcagcgtgaagtc
aagctgccctccggcggcgccgtggtcatcgaccacaccgaagcgctggtgtccatcgac
atcaactcggcacgcgccacgcgcggcagcgacatcgaggaaactgcgctacagaccaat
ctcgaagcctccgacgaaatcgcacggcagctgcggcttcgtgacatcggcggcctagtg
gtcatcgacttcatcgacatgacgccggccaagaatcagcgcgaagtggaaaaccgtgtc
cgcgatgcgctcaagctcgatcgcgcccgcgtgcagatcggacgcatctcgcgtttcggt
ctgatggaaatgtcacgccagcgcctgcggccctcgctcggcgaaaccagcggcgtggtc
tgcccgcgctgcaacggtcaaggcaccatccgcgatgtacgctccatctcgctgtccatc
atgcgcctcatcgaagaagaggccatgaaggagcgcagctcgcagattcgtgcggtcctc
ccggtgccggtggcgacttatctgctcaacgaaaagcgcagcgtgctcaacgacatcgag
cagcggcaaggcgtccaggtcgtcctcttgcccaaccctgacatggatacgccgcattac
gacatgcagcgtctgcgcgatgatcaagtcaatgaagaagacggccagcgttcgagcttc
gaactgcccactgagaccgaactgacgcaggaacccgacccggcgctcgaaaagccggtg
cagcgcgcggaagcggcggtcaagagcatcgcacacaacgccccggcacctacctcgctg
cagtccgatgccgagccccaaggcaagtcgagcaccgccacgacgcctgcaacagcgccc
gaaggcgggctcttctcacgcatggtgaaagggctcggcaagctgctcaatggtgacgag
agcgccgcctcgccccaggaaactgcgtccggcgccgaatcaccaaagcgcgcggccagc
acgtcgtccacggcggattcctcgcaacggcgcaaccgtaacggcaacagccaagcggaa
cgttcagacgaccagaagaccgccaacaagcagcagcggcaaacgtcacgcgacaacgat
gatacgcgccgcgatacagcgtccagcggtggcaacaacgctagcaataacgcccgcaat
ggcaatggcaataaccgccggcgtcgcaatggcgaggagtcacaagagcgccaggcatca
cgcaacgaaaaccgtcgcgaggacagcaacaactcgcagtccaaccgcaattcgcggcct
tcgcgtggctccggcaagtcgaacaatgccgaacgtagcgaaaacgccagtaacagcgaa
agccctaagcaggacactcgtaacggcggtaaatccaacaagccccgcgcggaaaacaag
gacaccaaggccaataagcccaagtcggagtctgcatcacaagcaacgcccgatgacaaa
gcctcggcctctccagcgcaaggcgaaacgccaaaggcagacagcaagccgaaacgtacg
cgcaataacccgcgtcggcgcagccgcaagcatgccgtgaatccgcaatccgtcgctgag
caggaaaaactgcaagctcagcagcaagaagcggcaagcgaaccggcacaagacgtccag
gaagggagcgccagtgccgctcccgccaaaccgtcggcagacaaagcgagtgccacgccg
agcgaggcagcatcgtccgccgtgaccgaaacgacgcccgaggcagcgacatcgcccagc
gagacgcagccgcgcacgggtacggatgacagcgcccaagcggacgaatcccgcaagaag
gcggcaacgtcatcgcgcccgaccgaggccccggcggagaacagcgctaccgaagcaccg
gcggagaacggcacgaccgaggcgccgcaagacgtagcagcgcagacgcctgaagcggat
agcaccgagcgtcccgccgcccaggcgacgccggaagacgctaccgctgatgactctgca
caagcgcccgctgatggctcttcacaagtgcccgctgatgactctccggcacaggcaccg
acgcaaaccgctcctgaagatgccggcgaaaccgccgaagcagcccccaaggagacagac
tccaaagaggaaagcggcacagcttctcaagccgagcagcacgtcccgcaagccagcgac
gtgccggttgagagcgagcaatcggcgccgtctacgcccagcaagccccttgcggctcag
gcaagcgatgacaagccggccaacgatgatgtgacgccgtcctcccagccagaggacgat
aacgtcgcggccaccgataagcccgctgcgacaacgtctgcggacaacgccgaagcacag
gccggctcggcttcgaccccgacgcccaaaccggcgcccgaggtcgaaacaccggcctcg
accgatgctccggccagtaccgaggaagcgtccgcgaccccagccgaggctccggcacca
acagccacacctcgcgccgaggaggcatccgctccggcagccactaccacggtagcgtcg
caagcgccccaggaatcggccacgccgcgtcagcgtcgtcgtgcccacaacgacccacgc
gaacagcgtcatcgtctccaggaaaacctcttccgcggcgacgacaacgcctaa
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integrated database retrieval system
