Crenobacter cavernae: DWG20_01870
Help
Entry
DWG20_01870 CDS
T09767
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccah
Crenobacter cavernae
Pathway
ccah03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DWG20_01870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccah03400
]
DWG20_01870
Enzymes [BR:
ccah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DWG20_01870
DNA repair and recombination proteins [BR:
ccah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DWG20_01870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
CTE_SPB4
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AXK38277
UniProt:
A0A345Y2X5
LinkDB
All DBs
Position
405532..408933
Genome browser
AA seq
1133 aa
AA seq
DB search
MLDLSPRLPVAGQRTRLRLVPDGLDAAALATLIDGKTPLLVLTADAQSAQRLKAELPFFA
PDARVALLPDWETLPYDHFSPHADLVSERLATLWQIRQSEVDVVLVPVTTAMTRMAPVEY
LTGRTFFLKLKGRLNADKLREDLVGAGYQHVTQVMVPGEFSIRGGLIDLFPMGSALPYRI
DLFDDEIDTLRTFDPDTQRTLYPVPEVRLLPAREYPSDEAGVTTFRQHYRERMEGDPSKS
RVYKEVSANLFPAGIEYYLPLFFDSTATLFDYAGDNVRLVLHRDVLAAAETFWQDVAARH
KQAHADYERPPLPPATLFLRPDELMGLLKPYARLEMPADDALEAGVLPLPELAVERRADK
PLHKLANFTERYAGRVLICAESLGRRETLAGFLRENGLRPALVEGWHDFLQGDARFALTV
APLFAGFALEAPAIAVVTEAELYQHVARSHTRRARAKASSDTMLRDLAEVKVGDPVVHEE
HGIGRYQGLVTLDLGEGETELMLLEYADGARLYVPVSQLHVISRYAGGSPEQAPLHKLGN
PAWEKAKKRAAEKARDTAAELLNLYAQRAAREGHAFSLSEHDYEAFAEGFGFEETPDQAG
AIEAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLVPTTLLAEQHYQ
NFADRFADWPVKIAELSRFKSGKETKAALEGLRAGTVDIVIGTHKLVQPDVAFKNLGLVI
IDEEHRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSAITTAPSRRLAVK
TFVSPLRDGTTREAVLRELKRGGQVFFLHNEVDTIENMRERLAELVPEARIGVAHGQLRE
RELEQVMRDFVQQRFNLLLCSTIIETGIDVPNANTILINRADKFGLAQLHQLRGRVGRSH
HQAYAYLLTSDGVTKDAQKRLEAIQLSEELGSGFYLAMHDLEIRGAGEVLGEGQSGEMHE
VGFTLFTEMLKQAVRDLKKGKTPDLDAPLGVTTEINLHSPALLPEAYCPDVHERLTLYKR
LATCESPGEIDSLHEELIDRFGLPPQPVKTLIDSHHLRLAAKPLGIQKVDASEAALQFLF
VKNPPIDPMKIIGLIQSKKQYKLAGQDKLRIEVEIDDVGERIARVKAVLRELG
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgctggatttgtccccccgcctgcccgtcgccggccagcgcacccgcttacggctagtg
cccgacggactcgacgccgccgctctcgccacgctgatcgacggcaagacgccgctcctc
gtgctgaccgccgacgcgcaaagcgcgcagcggcttaaggccgagctgcccttcttcgcg
cccgatgcacgcgtcgcgctcttgcccgactgggaaacgctgccgtacgaccacttctcg
ccgcacgccgacctcgtgtccgagcggctcgcgaccttgtggcaaatccgccaaagcgag
gtcgacgtcgtgctggtgccggtgacgacggcgatgacgcgcatggcgccggtcgaatac
ctgaccggccgcaccttcttcctgaagctcaagggaaggcttaacgccgacaagctgcgc
gaagacctggtcggcgccggctaccagcacgtgacgcaggtgatggtaccgggcgagttc
tcgatccgcggcggcctgatcgacctgttcccgatgggctcggcgctgccgtaccggatc
gacctgttcgacgacgagatcgacacgctgcgcaccttcgacccggacacgcagcgcacg
ctgtacccggtgcccgaggtgaggctgctgccggcgcgcgagtaccctagcgacgaggcc
ggcgtgacgacgttccgccagcattaccgggaacgcatggagggcgacccgtcgaagagc
cgcgtctacaaggaggtctcggccaacctgttcccggccggcatcgagtactacctgccg
ctgttcttcgattcgaccgcgacgctgttcgactacgccggcgataacgtgaggctggtg
ctgcaccgcgacgtgctggccgccgccgaaaccttctggcaggacgtcgccgcacgccac
aagcaggcgcacgccgactacgagcgcccgcctctgccgccggcgacgctgttcctgcgt
ccggacgaactgatggggctcctgaagccctacgcgcggctggagatgccggccgacgac
gcgctcgaggccggcgtgctgccgctgcccgagctcgcggtcgagcggcgcgccgacaag
ccgctgcacaagctggcgaacttcaccgaacgctacgccgggcgcgtgctgatctgcgcc
gagagcctcggccgacgcgagacgctggcgggcttcctgcgcgaaaacggcctcaggccc
gcgctcgtagagggctggcatgacttcctccaaggcgacgcgcgcttcgcgctgaccgtc
gcgccgctgttcgcgggcttcgcgctcgaagcccccgccatcgcggtggtcaccgaggcc
gagctctaccagcacgtcgcgcgcagccacacccgccgtgcgcgcgcgaaggcgagctcc
gacaccatgctgagggatctggccgaagtgaaggtcggcgacccggtggtgcacgaggaa
cacggcatcggccgctaccagggcctcgtcacgctcgatctgggcgaaggcgagaccgag
ctgatgctgcttgaatacgcggacggcgcgcgcctctacgtgccggtcagccagctgcac
gtgatctcccgctacgccggcggcagccccgaacaggcgcccttgcacaagctcggcaac
ccggcgtgggagaaggcgaagaaacgcgccgccgagaaggcgcgcgacaccgcggccgaa
ctcttgaacctctacgctcagcgcgccgcgcgcgaaggccatgcgttctccttaagcgaa
cacgactatgaggcgttcgccgaaggcttcggcttcgaggagacccccgaccaggcgggc
gcgatcgaggcggtgatcggcgacatgacctcgggcaagccgatggaccgcctggtatgc
ggcgacgtcggcttcggcaagaccgaggtcgccttgcgcgcagccttcgtcgcggtcatg
ggcggcaagcaggtcgcggtgctggtgccgaccacgctgctcgccgagcagcactaccag
aatttcgctgatcgtttcgccgactggccagtgaagatcgccgagctgtcgcgtttcaag
agcggcaaggagaccaaggcggcgctggaaggattaagagcaggaacggtcgacatcgtg
atcggcacgcacaagctggtgcagccggacgtcgcgttcaagaacctcggcctcgtcatc
atcgacgaggagcaccgcttcggcgtgcgccagaaggaacaactgaagcgcctgcgcgcg
aacgtcgacgtgctgacgctgactgcgacgccgatcccgcgcaccttgtcgatggcgctc
gagggcttgcgcgacttctcggcgatcaccaccgcgccctcccggcgcctggcggtcaag
accttcgtcagccccttgcgcgacggcacgacccgcgaggcggtgctcagggaactgaag
cgcggcggccaggtgttcttcctgcacaacgaggtcgacaccatcgagaacatgcgcgaa
aggctggccgaactcgtccccgaggcgcgcattggcgtcgcgcacggccagctgcgcgag
cgggaactcgaacaggtgatgcgcgacttcgtccagcagcgcttcaacctcttgctctgc
tcgaccatcatcgagaccggcatcgacgtgccgaacgccaacacgatattgatcaaccgc
gccgacaagttcggcctcgcccagttgcatcagctgcgcggccgcgtcggccgttcgcac
caccaggcctacgcctacctgctgaccagcgacggtgtcacgaaggatgcgcagaagcgg
ctcgaggcgatccagctgtccgaggaactgggctcgggcttttacctcgcgatgcacgac
ctggagatccgcggcgccggcgaggtgctcggcgagggccagtcgggcgagatgcacgag
gtcggcttcacgctgttcaccgagatgctgaagcaggcggtacgcgacctgaagaagggc
aagacgccggacctcgacgcgccgctcggcgtgaccaccgagatcaacctgcacagcccg
gccttgctgccagaagcgtactgcccggacgtgcacgaacggctgacgctgtacaagcgg
ctcgccacttgcgagagccccggcgagatcgactcgctgcacgaggagctgatcgaccgc
ttcggcctgccgccgcagccggtgaagacgttgatcgacagccaccacctcaggctcgcg
gccaagccgctcggcatccagaaggtcgacgcgagcgaggcggcgctgcagttcctgttc
gtgaagaacccgccgatcgacccgatgaagatcatcgggctgatccagagcaagaagcag
tacaagctcgccggacaagacaagctgaggatcgaggtcgagatcgacgacgtcggagag
cgcatcgcgcgcgtgaaggcagtgctgcgcgagctgggctga
DBGET
integrated database retrieval system
