Crenobacter cavernae: DWG20_04880
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Entry
DWG20_04880 CDS
T09767
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ccah
Crenobacter cavernae
Pathway
ccah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DWG20_04880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccah03019
]
DWG20_04880
Enzymes [BR:
ccah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DWG20_04880
Messenger RNA biogenesis [BR:
ccah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DWG20_04880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
AAA_22
HI1480
Motif
Other DBs
NCBI-ProteinID:
AXK38817
UniProt:
A0A345Y4G5
LinkDB
All DBs
Position
complement(1002981..1004453)
Genome browser
AA seq
490 aa
AA seq
DB search
MSIPVFADLKLAEPILRALADAGYTTPTPIQAQAIPQVLAGGDLLAAAQTGTGKTAGFTL
PLLQRLLETPPENARPGRPRALVLTPTRELAAQVEESVRTYSKYLKTTSMVMFGGVGFNP
QAQALKKRVDILVATPGRLLDHANQKTVDLSGIEILVLDEADRMLDMGFIHDIRKVLALL
PARRQNLLFSATFSDEIKTLADRLLDNPKLVEVARRNTTNELVDQSVHLVDRDKKTDLLT
RLIQDGDWHQVLVFTRTKHGANRLAEKLDKSGIPAAAIHGNKSQGARTKALADFKSNTLQ
ALVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSTGRAVSLVCVDELKLL
KDIEKLTKLSIAQFTVAGFEADLSVAPEPIINGRGGQRGGGRRDGQGGQGGQRQGQGQGQ
RQGQGQGGKPRQPHKAAAEGHAGPRPVPKGGRGDTPHSHAKPAPTSGSAPRGQGKPRSQT
SALFAPPKSR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgagcatccccgtttttgccgacctgaagttggccgagcccatcctgcgcgcgcttgcc
gacgccggttacacgaccccgacgccgatccaggcacaggcgattccgcaagtgctcgcc
ggcggcgacctgctggccgccgcgcagaccggcaccggcaagaccgctggcttcacgctg
ccgctgctgcagcgcctcttggaaaccccgcccgagaacgcgcgcccgggtcgcccgcgc
gcgctggtgctgacgccgacgcgcgaactcgccgcgcaggtcgaggaatcggtccgcacc
tactcgaaatacctgaagacgacgtcgatggtgatgttcggcggcgtcggcttcaacccg
caggcgcaggcgctgaaaaagcgcgtcgacatcctcgtcgcgacgccgggccgcctgctc
gaccacgcgaaccagaagaccgtcgacctgtccggcatcgagatcctggtgctcgacgaa
gccgaccgcatgctcgacatgggcttcatccacgacatccgcaaggtgttggcgctattg
ccggcgcgccgccagaacctgttgttctcggcgaccttctccgacgagatcaagacgctc
gccgaccgcctgctcgacaacccgaagctggtcgaggtcgcgcgccgcaacacgaccaac
gaactggtcgaccagagcgtccacctcgtcgaccgcgacaagaagaccgacctgttgacg
cgcctgatccaggacggcgactggcaccaggtgctggtgtttacgcgcaccaagcacggc
gccaaccggctggccgagaagctcgacaagtccggcatcccggccgcggcgatccacggc
aacaagagccagggcgcgcgcaccaaggcgctggccgacttcaagtcgaacacgctgcag
gcgctggtcgcgaccgacatcgccgctaggggcctggacatcgaccagctgccgcaggtg
gtcaacttcgagctgccgaacgtgccggaagactatgtgcaccgcatcggtcgcaccggc
cgcgccggctccaccggccgcgcggtgtcgctggtgtgcgtcgacgagctgaagctgttg
aaggacatcgaaaagctgaccaagttgtcgatcgcgcagttcaccgtggccggcttcgag
gccgacctgtcggtcgcgcccgaacctatcatcaacggccgtggtggtcagcgcggcggt
ggccgtcgcgacggccagggtggtcagggtggtcagcgccagggtcagggacaaggccag
cgccagggtcaaggccagggcggcaagccgcgccagccgcacaaagccgccgccgagggc
cacgccggtccgaggccggtgcccaagggtggccgcggcgacacgccgcactcgcacgcc
aaaccggcgccgacctcgggcagcgcgccgcgcggccagggcaagccccgttcgcagact
tccgcgctgttcgcgccgccgaagtcgcgttaa
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