Crenobacter cavernae: DWG20_05080
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Entry
DWG20_05080 CDS
T09767
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccah
Crenobacter cavernae
Brite
KEGG Orthology (KO) [BR:
ccah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccah03016
]
DWG20_05080
Enzymes [BR:
ccah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DWG20_05080
Transfer RNA biogenesis [BR:
ccah03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DWG20_05080
Prokaryotic type
tRNA splicing ligases
DWG20_05080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Phage_ssDNA_bind
Motif
Other DBs
NCBI-ProteinID:
AXK38855
UniProt:
A0A345Y4K3
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All DBs
Position
1041904..1043121
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AA seq
405 aa
AA seq
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MKTDYQVLEVEGGRPIKLWTEGVPVDAAARQQLMNTAKMPFIFGHLAVMPDVHLGKGSTI
GSVIPTVGAIIPAAVGVDIGCGMMAACTSLTAKDLPDNLGPLRRAIEIAVPHGRQPGHRD
PGAWNNPPREVDDAWQQLAPAFKRITDKYPHLAKTHHRVHLGTLGTGNHFIEVCLDEADR
VWFMLHSGSRGVGNAIGTLFIELAQDDMRQHLANLPDRDLAYLEEGSRHFDDYVEAVGWA
QAYARANRELMMQNVIAAAHRVITKPFDAQVEAVNCHHNYVQRETHFGRKVFVTRKGAVS
AQKGQLGIIPGSMGAKSYIVRGLGNEESFCSCSHGAGRTMSRSEAKRRFTVDDQVRATRG
VECRKDAGVIDEIPMAYKDIDAVMAAQKSLVEVVHTLRQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgaagacggattaccaggtgctcgaggtcgaaggcggcaggccgatcaagctgtggacc
gaaggcgtgccggtcgatgcggccgcgcggcagcagttgatgaacacggcgaagatgccg
ttcattttcggccatctggcggtgatgcccgacgtgcacctcggcaagggctcgaccata
ggcagcgtgatcccgaccgtcggcgcgatcatcccggcggcggtcggcgtcgacatcggc
tgcggcatgatggccgcgtgcacatcgctgacagcgaaagacctgccggacaaccttggc
ccgctgcgccgcgcgatcgagatcgccgtgccgcacggccgccagccgggccaccgcgac
cccggcgcgtggaacaacccgccgcgcgaggtggacgacgcgtggcagcagctcgcgccg
gctttcaagcgcatcaccgacaaatatccccatctcgcgaagacccaccaccgcgtgcac
ctggggacgctcggcaccggcaaccacttcatcgaggtctgcctcgacgaggcggaccgc
gtgtggttcatgctgcactcgggctcgcgcggcgtcggcaacgcgatcggcaccctgttc
atcgagctcgcgcaggacgacatgcggcagcacctcgccaacctgcccgaccgcgacctc
gcctacctcgaggagggcagccggcatttcgacgactacgtcgaggcggtcggctgggcg
caggcgtacgcgcgcgcgaaccgcgagctgatgatgcagaacgtgatcgccgcggcgcac
agggtgatcaccaagcccttcgacgcccaagtcgaggcggtcaactgccaccacaactac
gtgcagcgggagacgcacttcggccgcaaggtgttcgtcacgcgcaagggcgcggtgtcg
gcgcaaaagggccagctcggcatcatcccaggctcgatgggtgccaagagctacatcgtg
cgcggcctcggcaacgaggagagcttctgttcgtgcagccacggcgccggccgcacgatg
agccgcagcgaggccaagcgccgcttcacggtcgacgaccaagtgcgcgcgacgcgcggc
gtcgaatgccgcaaggacgccggcgtgatcgacgagatcccgatggcgtacaaggacatc
gacgcggtgatggccgcgcagaagtcgctggtcgaggtggtgcacacgctgcggcaggtg
gtgtgcgtgaagggctag
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