Crenobacter cavernae: DWG20_10105
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Entry
DWG20_10105 CDS
T09767
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ccah
Crenobacter cavernae
Brite
KEGG Orthology (KO) [BR:
ccah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccah03009
]
DWG20_10105
Enzymes [BR:
ccah01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DWG20_10105
Ribosome biogenesis [BR:
ccah03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DWG20_10105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_15
TRAM
UPF0020
MTS
Methyltransf_11
Methyltr_RsmB-F
Methyltransf_23
CMAS
Cons_hypoth95
Motif
Other DBs
NCBI-ProteinID:
AXK39762
UniProt:
A0A345Y760
LinkDB
All DBs
Position
complement(2078604..2080193)
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AA seq
529 aa
AA seq
DB search
MSHSQTVALVESLDYEGRGVAHVEGKTIFIDGALPYEKVIYRAYRKKPTYENADVISVLK
ESFVRTKPRCPHFGVCGGCSMQHVEFSAQVAIKQRVLEDNLAHLGKVKAERILPPIAGPA
WGYRHRARMSARYVEKKGGVLVGFHEKRSSFIADMHECHILPPHISRLIDPLRAMIERLS
IKQRMPQVEIAVGAKVSVLVFRNMDDISEDDLKVFAEFVDTHTHIHHPLQIWLQPKGPDT
CYPIYPENAPKLSYEIADFDVEMPYYPTEFTQVNPEINNVMVARALKLLDPQPGERIADM
FCGIGNFTLPIARSGATVHGMEGSQALVKRAIENATHNGLEDSVSYEMANLFDVTEESFA
ALGHFDKMLIDPPRDGAMALVKAITDETAPARIVYVSCNPATLARDANVLVNTKGYTLKA
GGIINMFPHTAHVESVAWFEKTGPCMSRAETEAIEAAEAAARAAAKEAKKAREAAAAKAK
ADEEAERIAQKAARRQHYLENQPYYDARNKKAEGNADAAAPDSQAEPKE
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgagtcattcccaaaccgtcgccttggtggagtccctggactacgaaggccgaggcgtt
gcccatgtagagggcaagaccattttcatcgacggcgccctgccttatgaaaaggtaata
taccgcgcctaccgcaaaaaacccacctacgaaaacgccgatgtcatatcggtgctaaag
gaaagcttcgtccgcaccaagccgcgttgcccgcacttcggcgtctgcggcggctgttcg
atgcagcacgtcgaattctccgcgcaggtggcaatcaagcagcgcgtactcgaggacaac
ctcgcccacctcggcaaggtcaaggccgaacgcatcctgccgccgatcgccggtccggcc
tggggctaccgccaccgtgcgcgcatgtcggcgcgctacgtcgagaagaagggcggcgtg
ctggtcggcttccacgagaagcgttcgagcttcatcgccgacatgcacgagtgccacatc
ctgccgccgcacatctcgcggctgatcgaccccttgcgcgcgatgatcgaaaggctgtcg
atcaagcagcgcatgccgcaggtcgaaatcgccgtcggcgccaaggtcagcgtgctggtg
ttccgcaatatggacgacatcagcgaagacgatctgaaggtcttcgccgagttcgtcgat
acccacacccacatccaccacccgctgcagatctggctgcagccgaagggaccggacacc
tgttatccgatctacccggaaaacgcgccgaaactgagctacgagatcgccgacttcgac
gtcgagatgccgtactacccgaccgagttcacccaggtgaaccccgagatcaacaacgtg
atggtcgcacgcgcgctcaagctcttggacccgcaaccgggcgagcgcatcgccgacatg
ttctgcggcatcggcaacttcacgctgccgatcgcgcgctccggcgccaccgtgcatggc
atggaaggcagccaggcgctggtcaagcgcgccatcgagaacgcaacgcacaacggcctc
gaggacagcgtcagttacgaaatggccaacctgttcgacgtgaccgaggagtcgttcgcc
gcgctcgggcatttcgacaagatgctgatcgacccgccgcgcgacggcgcgatggcgctg
gtgaaggcgatcacagacgagaccgcgcccgcacgcatcgtctacgtgtcctgcaacccc
gccacgctggcgcgcgacgccaacgtgctggtcaacaccaagggctacacgctgaaggcc
ggcggcatcatcaatatgttcccgcacaccgcccacgtcgaatcggtcgcctggttcgag
aagaccggcccgtgcatgagccgcgccgagacggaggccatcgaggcggcagaagccgcc
gcgcgcgcagccgccaaggaagccaagaaggcgcgtgaagccgctgcggccaaggccaag
gcggacgaggaagcggaacgcatcgcccagaaagcggcgcggcgccagcattatctggaa
aaccagccttattacgacgccaggaacaagaaggccgaagggaacgctgacgcggccgcc
cctgacagccaggcagaacccaaggaatga
DBGET
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