Crenobacter cavernae: DWG20_12375
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Entry
DWG20_12375 CDS
T09767
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ccah
Crenobacter cavernae
Pathway
ccah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DWG20_12375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccah03019
]
DWG20_12375
Enzymes [BR:
ccah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DWG20_12375
Messenger RNA biogenesis [BR:
ccah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DWG20_12375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
AAA_22
Cas3-like_C_2
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AXK40173
UniProt:
A0A345Y8C1
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All DBs
Position
2536578..2537840
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AA seq
420 aa
AA seq
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MTFSSLGLIEPLLKTLDTIGYQTPTPVQVQTIPAILARRDLMAAAQTGSGKTAGFALPLL
QRLAMEGPQVASNSVRALVLVPTRELAEQVHQSFREYGTHLPLRTDVVYGGVSINPQMMK
MRRGLDILVATPGRLLDLLDHNALRLSAVSILVLDEADRLLDMGFADEIGRILAQLPKDR
QNLFFSATFPPAVQALAEKMLRNPARIEVQPAPTVEATIRQRAIEVDASRRTQLLCHLIH
ESCWDRVLVFVATKHSAEQLADKLGKAGIKAAAFHGELSQGARSHVLAEFKACRLQVVVA
TDVAARGIDIEQLPAVVNYDLPRSAVDYIHRIGRTGRAGESGTAVSFISAASEPHFRLIE
KRQRLRLSREQISGFEPIATTAPVTALMTASLAGPSTGGIKGKRKSKKDKLREAVARKND
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgacgttctcctccctcggtttgatcgaaccgctgttgaaaaccctcgacaccatcggc
taccaaacgcctacgccggtgcaggtgcagacgattccggcaattctggctaggcgtgat
ctgatggcggcggcgcaaaccggtagcggcaagaccgccggctttgcgttgccgctcttg
caacgtctggccatggagggcccgcaagtggccagcaattcagtgcgcgccttggtgctg
gtgccaactcgcgaactggctgagcaggtgcatcagagctttcgtgaatacggcacgcac
ctgccactgcgcaccgatgtggtttacggcggggtaagcatcaacccgcagatgatgaaa
atgcgcagaggcctcgacatcctggtcgccacaccaggccgcttgctcgacttgctagac
cacaatgcacttaggctttctgcggtctcgatactggtgctggatgaggcggatcgcctg
ctggatatgggctttgccgacgagatcgggcgtatcctggcgcagcttccgaaggatcgc
caaaacctgttcttctccgccacttttccgcccgcagtacaggcgctcgctgaaaagatg
ctacgcaatccggcccgcattgaggtgcaacccgcgccgaccgtcgaagctaccatccgg
cagcgagccattgaggtcgatgccagccgccgcacccaattgttatgtcatctgattcac
gaaagctgctgggaccgggtgcttgtttttgttgccaccaaacactctgcggaacagcta
gccgacaagctgggcaaagccggaatcaaggcagccgccttccatggcgaactcagtcaa
ggtgcacgcagccatgtcttggcagaattcaaagcttgccgattgcaggtggtcgtcgcc
acggatgtcgccgctcgcggtatcgacattgagcaattgcctgccgtggtgaactacgac
ctgccgcgatccgcggtcgactacattcaccgcatcggccgcaccggccgcgcgggcgaa
agcggtaccgcggtcagcttcatcagtgcggcctccgaaccgcatttccggctcatagaa
aagcgtcaacgcctccgcctgtcacgcgaacaaatctcgggctttgaacctatcgcaacc
acggcaccagtcactgcattgatgactgcgtcattagcagggccctctaccggcggtatc
aaaggtaaacgcaagagcaagaaagacaagctacgcgaagccgttgcacgcaaaaatgat
tag
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