Conexivisphaera calida: NAS2_0179
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Entry
NAS2_0179 CDS
T06635
Name
(GenBank) Probable exosome complex RNA-binding protein 1
KO
K03679
exosome complex component RRP4
Organism
ccai
Conexivisphaera calida
Pathway
ccai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAS2_0179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccai03019
]
NAS2_0179
Messenger RNA biogenesis [BR:
ccai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NAS2_0179
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NAS2_0179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
RRP4_S1
ECR1_N
KH_6
RRP40_S1
Motif
Other DBs
NCBI-ProteinID:
BBE41576
UniProt:
A0A4P2VAR7
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All DBs
Position
174701..175432
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AA seq
243 aa
AA seq
DB search
MVGTRGRKYAVPGDLVAEGRSLVAGENTYKVGNRIYATSVGLVEISGNEVRVIPLEGRYV
PRQGDVVVGIVTDYNAVAWTVDINSIFYGSIFVRDLVRRGSMEKLAISDVLNVGDVVVSK
IFSFSVNRDPLLSLRGPGMGRVTEGELMRISPRSVPRLLDRRERLYKMIEEATGCELTIG
MNGLIVVKGAPDGILQVARALSVVESEPRYEALVRKLKSLLKVREKEPEEGNGKEGVEVG
AGQ
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
ttggttggcacgagggggaggaagtacgccgtgcccggcgaccttgtagccgagggcaga
tcgctcgtggcgggggagaacacgtacaaggtaggcaacaggatatacgcgacctccgtt
gggctcgtggagatatccgggaacgaggtgcgcgttatcccgctggagggcaggtacgtg
ccaaggcaaggcgatgtggtagttggaatagtgacagattacaacgcagtcgcttggacg
gtcgacataaactccatcttctatggatccatattcgtgagggatctcgtgaggagggga
tctatggagaagctcgccatatcggacgtgctcaacgtcggggacgtcgtcgtgtccaag
atattttcattcagcgtcaacagggatccgttgctttccctcaggggtcccgggatgggg
agggttacggagggcgagctcatgcgcatatcacctcgcagcgtgccacgcctgctggat
aggcgggagcgcctgtacaagatgatagaggaggcgacgggctgcgagttaacgataggg
atgaatggtttaatagtggtgaaaggtgcaccagatggcatattgcaggtcgcgagggca
ttgagcgtggtcgagtcggagccgagatacgaggcactggtcagaaagctcaagtcactc
ctgaaggtgcgggagaaggagcccgaggagggcaatggtaaggagggagtggaagttggc
gcagggcagtga
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