Cajanus cajan (pigeon pea): 109788542
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Entry
109788542 CDS
T04868
Name
(RefSeq) uncharacterized protein LOC109788542 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109788542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109788542
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109788542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
Motif
Other DBs
NCBI-GeneID:
109788542
NCBI-ProteinID:
XP_020202875
LinkDB
All DBs
Position
Unknown
AA seq
1971 aa
AA seq
DB search
MSDTSSVDASLWWDSFTVLLTELEISSLSSDLPPNLAKKLKDNHAWFVDLLSRFKPPNQK
SKQALNSKTLKIGSHQLTIQPHLKDKALQISSCLLLDEVQSYILVETSIKHNNTAADSTA
PEFLHLMLIQYYKERQCLLKCIRWILMHAIHDGPVSEGNTMKEEARKLFHDGLETKLILF
FDNLLSCSYPEQMDVDLFTLWAEETLIENNLVLDIIFLAYYDSFCTCSSETWRKFGSLYK
GVLAGDFNLGKLAITTEAQQLAYHAKVQMLLILIETLNLENVLQMVHDEVPYRKGVSTFS
MTDVQEMDALVSTFNAFEMNEAGPLVLAWAVFLYLLLTLLEKDENNELMEIDHIGYVRQA
FEAGSLHYCLEILECDILKEYDGPVSGYRSVLRTFISAFIASYEINLQVQSEDSNPSLIL
DILCKIYRGEESLCIQFWDKESFIDGPIRCLLCNLESEFPFRTVELVRLLSSLCEGTWPA
ECVYNFLNRSVGISSLFEINTDSQTVDVSRIVEARQAVQVPGIEGFFIPAGTRGRVLRVV
GENTALVRWEHSPSGMFVLILHLAQEMYLNNKDEVVCTLDLLSRLVSFNTGICFAVMDIS
NSLQFHAVDSMNEQVEKRVWVVEIICNLIKNLSLNACGAALMSMGIKILGIMLICSPSNV
AAATLNTNLFDITLQTPVFNVGGNGLSSGSWLLSCKLARMLLIDCEQNSNDCPLAMSVLD
FTIQLVETGVEHDALLALIIFSLQYVLVNHEYWKYKMKHIRWKITLKVLELMKKCISSIP
YYGKLGEIIRNVLFSDSSIHNSLFQIVCSTAHALEKLHVSRLLDPVEIEGLQLAIGSVLD
ILSVMLTKLSKDTSSNFPVFLQAVFSCTKPVPVVTSVLSLISYFGDPAIQFGAVRLISML
FSIADCIQPFSYGITCFVPDNEIMNLRHSVSYILLEQSVSNEDLFVATVNLFTSAAHYQP
SFIVAIFAPDENTEDHLSIGDAKLQKNETSPIPVVSKRSSLVDALMHYIERADDLIKSNP
RILLCVLNFMLALWQGAPQYANVLMLLRRHGKFWKHLANAISNIAGSEIPLLRNLKEKDA
FNLAYCFHCQSVILEIMAYELFLQKKLFHAESLVKDAADSKDKEQNATKIDKSKATDHHD
LKGIWSSWFKDSVLEKLIKSYTSGGYSNDIYCGAKVATSLFSVHVMMKLAVCDSGSLSVS
LLQKIHEILMKLSVHPAFSELLSQYSQRGYSEGKELKKLILSDLYYHLQGELEGRKIGIG
PFKELSEFLVESNFLGTYQHQFNEDSFTKNMLTKNVYLFDLTHLRADLRLHVWDCSNWRT
SKEIAETMLRFLQDANSVMLLSSSKLSALKGLIAVLAVNHDDSQGKATTGETSDKLIFTF
MDNICQSFLATIESLSSVLDASEDILSFLACQVELLLHLERTVCKSLPLHVSLLVLKCAS
SGLKLLSALKPLPSEANMIMKLLLTLLLSVLQSNSFDAHSGGATDESSGEDFSKVSNTTL
GILPIICNCIATSEHCMLSLSVMDLILRSFLTPRTWLPILQNHLQLPIVMLKLHDKNSAS
IPIIMKFFLTLARVRGGAEMLYCSGFLSSVKVLFAESGENFSRIGNENLGSSSEKLVVPR
DIWAIGLAVVTAMVKSLGDNSSGTAIVDSMIPYIFSEKAQLIFSSLNALDFPSHDHDKKR
PRAQRPLISLATLKETEHTLMLMCELAKHWNSWIKAIRNVDRQLREKCIHLLAFISRGSQ
RLGELSSKNAPLLCPPTVKEDLEICLKPSYVNSRNGWFALSPLGCVPKLKISSFSTALST
YDQVTESTAPVPKTCFSDTVALQVYRIAFLLLKFLCLQTEGAAKRAEEVGFVDLAHFPEL
PMPEILHGLQDQAIAIIAELCQANKLKVSAETQDVCNLMLQILEMALHLELCVLQICGIR
PVLGRVDDFAKEAKSLFSALEGHAFLKASRNSLKQMISCVYPGLLQAENFV
NT seq
5916 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatacaagttccgtcgatgcttctctgtggtgggactcattcactgtcctcctc
accgagctagaaatttcctctctgtcctcagatctcccaccgaatttggcgaagaagttg
aaggacaaccatgcctggttcgtggacttactttcgcgcttcaagccgcccaatcagaaa
tccaagcaagctttgaattcaaaaacgctgaaaattggatctcaccagctcactattcaa
cctcacctgaaagataaagcgttgcagattagctcctgcttgctgctagatgaggttcaa
tcatacattcttgtcgaaacgtccatcaaacataacaatactgctgctgattccacagct
ccggagtttcttcacttgatgttaattcaatattacaaagagcgacagtgcttgctgaag
tgcatcaggtggattctaatgcatgctatacacgatggtcctgtgtctgaaggcaatacc
atgaaggaggaggcaagaaaactgtttcatgatggactggaaactaaattaatattgttc
tttgacaatcttttgtcttgcagttacccagagcaaatggatgttgatctttttactctg
tgggctgaggagactctaatagaaaacaacttggttctagacattattttcctagcatac
tacgactcattttgtacctgtagcagtgaaacatggaggaagtttggctctctttacaag
ggggtcttagctggtgattttaacttgggaaagctagcaattactactgaagcacagcag
ttagcttatcatgctaaagttcagatgctgcttattttaatagaaaccctgaacttggag
aatgttcttcaaatggttcatgatgaagtaccttacaggaaaggtgtgtctactttttcc
atgactgatgtccaagagatggacgcattagtttctactttcaatgcttttgaaatgaat
gaagctggtcctctagttctagcgtgggcagtatttctttatttactcttgacacttctg
gaaaaagatgaaaacaatgagctaatggagattgatcacattggttatgtacgtcaagcc
tttgaagcgggatccttgcattattgtcttgaaattcttgaatgtgacattttgaaggaa
tacgatggcccggtgtctggatatcgcagtgttttaagaacattcatttctgcatttatt
gcatcttatgaaatcaaccttcaggtacagtctgaggacagtaatccgagtttgatactg
gatattctttgcaagatttatcgtggagaggaatcattatgtattcaattttgggacaag
gaaagttttattgatggtccaattcgttgtcttctttgtaacctagagagtgagttccct
ttccggacagtagaacttgtacgattgctgtcatccctttgtgaaggaacttggcctgca
gagtgtgtgtataactttctaaataggtctgttggtatatcatccttgttcgagattaat
actgactcacagacagttgatgtctctcgcatagttgaggcacgacaggcagtgcaagtt
cctggcattgaaggtttttttattccagctggaactcgtgggcgtgtcttgagagttgtt
ggagagaatactgcccttgtacgatgggagcattcaccatctgggatgtttgtattaatc
ctacatttggcccaagagatgtatttgaacaacaaggatgaagttgtttgcactcttgac
ctgcttagtagattggtgtcctttaacactggtatttgctttgctgtgatggacattagc
aactctctgcaatttcacgctgttgactcaatgaatgagcaggttgaaaagagggtctgg
gtggttgagataatttgcaatctaataaaaaacctgtctctgaatgcctgtggtgctgca
cttatgtcaatgggtatcaagattttggggattatgttgatttgttctccatcgaatgtt
gcagcagccactctaaacacaaatctgtttgatatcactttgcagacacctgtgttcaat
gtaggtggtaatggcttgtcaagtgggtcatggttgctttcttgcaagctggccaggatg
cttttaattgactgtgagcaaaacagtaatgactgccccttggcaatgtcagtgctagac
ttcaccatacagcttgtagaaacaggagtagagcatgatgctctcctggcattgatcatt
ttctctttgcagtatgtcctagtcaatcacgagtattggaagtacaaaatgaagcatatt
agatggaaaataacattgaaggttcttgagttgatgaaaaaatgcatttcatcaattcct
tattatggaaaattgggtgagatcatacgcaacgtgttgttctctgattcttccatccat
aactcacttttccaaattgtttgctctactgctcatgctttggagaaattgcatgtaagc
cgcctccttgacccagtggaaattgaagggttacagcttgctataggttctgttttagat
attctttcagtcatgttgaccaaactttctaaggatacatcatcaaactttccagttttt
ctccaagcagtgttctcatgcacgaaaccggttcctgttgtcacttctgttttgtccttg
atttcatactttggagatcctgccatccaatttggtgctgttaggttaatttcaatgtta
tttagcatagcagattgtattcaaccattttcgtatggaatcacatgcttcgttccagat
aatgagataatgaatttgaggcactctgtcagctacatactgctggagcagtcagtttca
aatgaagatctctttgttgcaactgttaatctgtttacttctgctgcacattaccagcct
tcttttattgttgctatctttgctccagatgagaacactgaagaccacttgagcattggt
gatgcaaagctgcaaaaaaatgaaacttctcctataccagtagtgtctaaaagatcaagt
cttgtagatgcacttatgcactatattgaaagggcagatgatctgatcaagagcaatccc
cgcattcttctttgtgtacttaacttcatgcttgccttatggcaaggggccccccagtat
gccaatgtcttgatgttgttaagaaggcatggaaagttctggaaacacttggccaatgca
atctcaaatattgctggcagtgaaattcccctgctcaggaatctgaaagaaaaagatgct
ttcaatctggcatactgtttccactgtcaatctgtcatactggaaatcatggcatatgaa
ttattcttgcagaaaaagttgtttcatgcagagtcacttgtgaaggatgcagctgattct
aaggacaaggagcaaaatgccacaaaaattgataaatctaaagccacagatcatcatgat
ctgaagggaatctggtcttcatggttcaaagactctgttctagagaaactaataaagtca
tacacttctggtggatatagtaatgatatatattgtggtgcaaaggttgccaccagttta
ttctctgttcatgtgatgatgaaattagcagtttgtgactctggaagtttatctgtgtcg
ttgcttcagaagatacatgaaattctgatgaagttgagcgttcatcctgctttttctgaa
ttgctatctcaatattcacaacgtggttacagtgaggggaaggaactaaagaaattgata
ctcagtgatctctattatcatttgcaaggagagcttgaagggagaaaaattggtattgga
ccattcaaagaattatctgagtttcttgttgaatcaaactttttgggaacctatcaacac
cagttcaatgaagactcttttacaaagaacatgcttacaaagaatgtgtacttgtttgac
cttacacatttgcgagcagatttgaggttacatgtgtgggattgttctaattggagaacg
tcgaaggagattgcggaaaccatgttgcgtttcctgcaggatgcaaactcagtcatgttg
ctttcaagttcaaagctttctgcattaaagggactgatagctgtgttggctgtcaaccat
gatgattcacaaggaaaggctacaactggagagacctctgacaaactcatattcactttc
atggataatatatgtcaatctttcctcgctaccatagaatcattatcatctgtactagat
gcctctgaggatattctcagttttcttgcatgtcaagtagaattactcctccacttggaa
agaactgtttgcaaaagcctccccttacatgtatccctacttgttctgaaatgtgccagt
tcaggtcttaaactattgagtgcgctgaagccgttaccttctgaggctaacatgatcatg
aaacttctactcacattgctgctttcagtactacagtctaactccttcgatgcacattca
ggtggggcaaccgatgagagttctggtgaagacttctcaaaggtttcaaatacaacccta
ggaatcctacccattatttgcaactgcattgcgacttctgagcattgcatgctatccctg
tcagttatggacttgatactgagaagcttcttaacacctaggacttggttacctatcctg
cagaatcatctccaactgccaattgttatgctcaaactacatgataaaaattcggcctct
attccaataataatgaagttctttttgacccttgcacgggttagaggaggtgctgagatg
ctttattgttctggcttcttgtcatctgtgaaagtgctatttgctgaatctggtgagaat
ttctcaagaattggtaatgagaatctcggcagctctagcgaaaagttagtagtacctcga
gatatttgggcaattggattagctgtggttactgctatggttaaatccttgggagacaat
tcttctggcactgctattgtggacagcatgataccttacattttttcagagaaagctcaa
cttattttctcttctctgaatgccctagatttcccttctcacgatcatgacaagaaaaga
cctcgagcacagagaccattgatttcgcttgctactcttaaagaaacagaacatacttta
atgctcatgtgtgagctggcaaaacattggaattcatggattaaggcaataagaaatgtg
gatagacagcttagagagaaatgtatccatcttttagccttcattagcaggggatctcaa
cgccttggtgaattgtcaagcaagaatgcccctcttttgtgtccacctactgtaaaagag
gatcttgaaatttgcttaaaaccttcctatgtcaatagcagaaacgggtggtttgctctt
tcaccacttggctgtgttccaaagctaaagatctcttccttctcaactgcattatctacc
tatgatcaagtaactgagagtaccgctcctgttccaaaaacatgcttctctgacactgtt
gccctgcaggtatatagaatagcatttcttcttttaaagtttctctgtttacaaactgag
ggtgctgctaaaagggccgaggaggttgggtttgttgatcttgcacattttcctgagctt
ccaatgccagaaatcttgcatggactacaggatcaagctattgccattattgcggagctc
tgtcaagccaacaaactaaaggtctccgcagaaacacaagatgtttgcaatttaatgttg
caaatacttgaaatggccttgcacttggaactctgtgttctgcaaatttgtggcataaga
cctgtattagggcgtgtggatgattttgcaaaggaagccaaatctttatttagtgcattg
gagggccacgcatttctaaaagcatctcgcaactctctaaaacagatgatatcttgtgtc
tatcctggattgctgcaagcagagaatttcgtataa
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integrated database retrieval system
