Cajanus cajan (pigeon pea): 109788715
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Entry
109788715 CDS
T04868
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109788715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109788715
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
109788715
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
OB_RNB
Dis3l2_C_term
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
109788715
NCBI-ProteinID:
XP_020203102
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MLHNKSFVKKTKGGKVMKQVREHYLRDDIYCGAPFCTVCDSSAARLSASPSTILVVDTNV
VLNQIDLLENPAFDNVVVLSIVLEEVKNKNMSVYNRVRSICSNSMRKFFVFSNEYHRDTY
VKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDRENKRKACEEGIFAETVESY
VKSLDRPDLLDLLVRPASEDVHMEEVEDLRPSKRKLIYSEHKPMSEITSGLHRGIYHQGK
LRVNRHNPFEAYVGSESIGDEIIIYGRSNMNRAFDGDIVAVELLPQDQWQEASSLSIAGE
EDEDVDEDVHLAPNSADDAPRTIPQQGSSEKVNAAPSRPSGRIVGIIKRNWHSYCGSLDP
MPMPAGSGGIAHALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVR
TIGEIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWVVSSEDLSNPIRQDLRHLRVF
SVDPPGCKDIDDALHCHALPNGNFEVGVHIADVTNFVHPGTPLDDEAAQRGTSVYLVERR
IDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIISTRYTKSVIKSSAALSYVEAQAR
MDDSRLMDPITADLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQI
REANQMVEEFMLAANVSVAQQILKTFPLCSLLRRHPTPTREMLEPLLMTAAAVGLHLDVS
SSKALADSLDHAVGEDPYFNKLIRILATRCMSQAVYFCSGDLSPPEYHHYGLASPLYTHF
TSPIRRYADVIVHRLLAASLGISKLPSVFQDRLQLTNISDNLNYRHRNAQYAGRASVELH
TLIYFRKRPTDTEARIVKIRSNGFFVFVPKYGIEGPVYLTKAEKGSGEWYVDEQQQKIKK
MDGSLSYSILQTVQIHMEVVEPQPNRPKLQLTLI
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgctccacaacaagtccttcgtcaagaaaaccaaaggtggcaaagtcatgaagcaagtg
cgggagcactacctgcgtgacgatatatactgcggcgcaccgttttgcaccgtttgcgat
tcctccgccgctcgcctcagtgcttcgccttccaccattctcgtcgtcgacaccaatgtc
gttctcaaccagattgatttgctggagaatcccgcgttcgacaatgttgtggtgttgtcc
atcgtgctggaagaggttaagaacaagaacatgtctgtttacaaccgtgtaagatctatc
tgcagcaattccatgaggaaattctttgttttctccaatgaataccacagggatacatat
gttaaggaaatgagtggggaaactaaaaatgataggaatgatcgagctatacgagtggct
actcagtggtatcagaatcatcttggtggtgcagtaaaggttttgcttataactaatgat
agagagaacaaaaggaaggcttgtgaagagggcatttttgctgaaacagttgagtcatat
gtgaagtctttagaccgacctgatttactggacctgcttgtgcggcctgcatctgaagat
gtgcacatggaagaggttgaagatcttagaccatccaagaggaaactaatctattctgag
cataagccgatgtctgaaattacttctggtttacatcgtggaatatatcatcaagggaaa
cttcgtgtaaaccgtcataatccatttgaagcatatgttgggagtgagagtattggtgat
gagataattatttatgggcgctcaaacatgaatcgagcatttgatggagatattgtggca
gttgaacttctgcctcaggaccagtggcaagaagcttcatctctatctatagccggtgaa
gaagatgaggatgtggatgaagatgttcatctagctccaaatagtgctgatgatgcacct
agaactattcctcagcagggttcttctgaaaaagtaaatgctgcacccagtcgcccttct
ggtcgtattgttggcattataaagagaaactggcattcgtattgtggatctttggaccca
atgcctatgcctgcaggaagtggtggtattgcccatgcactgtttgtctccaaagatcgc
agaattcccaagattcgaatccaaacccgtcaacttgagaaccttttggataagaggatt
attgtggcagttgattcttgggatcgccaatcacgatatccatcaggccattatgtgaga
actataggggagataggtgatagagatacagaaagcgaggtggttttgatagaaaatgat
ataaatacacgaccattctcttcacaagtgctggcatgcttgccaccattgccatgggta
gtctcttctgaagatttgtctaatccaatcaggcaggacctgcgtcatttgcgtgtcttc
agtgtggaccctccaggctgcaaggatattgatgatgcactccactgtcatgctcttcca
aatgggaactttgaagttggagttcatattgctgatgtgacaaattttgttcatcctgga
accccccttgatgatgaggctgcacaaaggggtacatctgtctaccttgttgagcggcgg
atagacatgcttcccaaaccactcactgaggacatatgttctcttcgttctgatgtggaa
aggcttgcattctctgtcatatgggaaatgacacctgaagcagacattatttccacgaga
tacacaaaaagtgtcataaaatcttctgcagcattgtcttatgttgaagcacaagcgagg
atggatgatagtcgattgatggatccaattactgcagacttgaggaatatgaatagttta
gccaagaaaatgagattaaggcgtatagagagaggagctttgactcttgcatctgctgaa
gtcaaatttcaaattgacacggagactcatgacccccttgatattggaatgtaccagatc
cgggaggccaaccaaatggtggaggagtttatgcttgctgctaatgtttccgttgcacaa
caaattcttaaaactttcccattgtgctcattattaaggcgtcatccaacaccaactaga
gagatgcttgaacccttgctaatgactgctgctgcagttggcttgcacttggatgtctcg
tcatcaaaagcattggctgattctcttgaccatgctgtgggtgaggatccatacttcaat
aagttaatccgtatactggcaactaggtgtatgagtcaggcggtttatttctgcagtggg
gatcttagccctccagaatatcatcattatgggcttgcatctcctttgtatacccatttc
acatcacctataagaagatatgcagatgtcattgtgcacaggctacttgctgcttcttta
ggaatatccaagttaccgtctgtatttcaagacagacttcagctcactaatatttcagac
aatttaaattatcggcacaggaatgcccagtatgcagggcgagcatctgtagagctacat
actctaatttatttcaggaagaggcctacagacacggaggctagaatagtgaaaataaga
tctaatggattttttgtgtttgttcccaaatatggcatagaaggacctgtatatctgaca
aaagctgaaaagggaagtggagaatggtatgtagatgagcaacagcagaagattaaaaag
atggacggtagcctttcatacagcattttgcagacagtccaaattcacatggaggttgtg
gagcctcagcctaaccggccaaaacttcagcttactctcatctag
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