Cajanus cajan (pigeon pea): 109788935
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Entry
109788935 CDS
T04868
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109788935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaj03021
]
109788935
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109788935
Transcription machinery [BR:
ccaj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109788935
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109788935
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
Torus
Motif
Other DBs
NCBI-GeneID:
109788935
NCBI-ProteinID:
XP_020203389
LinkDB
All DBs
Position
Unknown
AA seq
694 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDAAPSAAAAASGPLVQHDSSAAASAVSNGGPAAAAPSNADPSAA
NVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHT
NEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQR
GSNYNQQAEKSQLPQGNNSTNQGVTGKPLPAESGNAQPQQQVQQSQQPVSQSQMQNPANG
QPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVI
LIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRH
LRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISIAAESKREEEKAKGVN
PDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGRGA
RPMPGMQGFNPVMMGDGLSYGPVAPDGFGMPDLFGVGPRGFAPYGPRFSGDFGGPPAAMM
FRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVAGANPPRGGRPVNMPPMFPPPPPLPQN
ANRVAKRDPRATDRNDRYGSGSEQGKSQDMLSQSGAPDDEMQYQQGYKGNQDDHPAANNF
KNDDSESEDEAPRRSRHGEGKKKRRGTEDVITKL
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggaggattcagagggcgttctcagcttcgatttcgagggcggcctcgacgccgcgccc
tccgccgccgccgcagcctccggtccgctcgtccagcacgactcctccgcggccgcctcc
gccgtatccaacggaggccctgccgcagctgcgccctccaacgccgacccctccgctgcc
aacgtccccggccggcggagcttccggcagacggtgtgccggcactggctgcgcagcctg
tgcatgaagggcgacgcgtgcgggttcctgcaccagtacgacaaggcgcggatgccggtg
tgcaggttctttaggctctatggggagtgccgagaacaggattgcgtgtataagcacacc
aatgaagacatcaaggagtgtaacatgtacaagttgggattttgtcctaatgggcctgat
tgccgatataggcatgcaaaatctcctggacctccacctcctgttgaagaggtccttcaa
aagatccaacatttatactcctacaattataattcatctaataagtttttccaacaaagg
ggttctaattataatcaacaagctgaaaaatcccagcttcctcaaggaaataattctaca
aaccaaggggtgacaggaaaaccattaccagcagagtcgggaaatgcccagccacagcaa
caagttcaacagtctcagcagccagtcagccagagccaaatgcaaaatcctgctaatggc
cagcctaatcaagccaatagaactgcaacccccttacctcaaggaatatctaggtatttt
attgttaaaagttgcaatcgggaaaatttggagttatctgtacaacaaggggtatgggcc
actcaaaggagcaatgaatccaaactaaatgaagcatttgactccgtggaaaatgtgata
ttaattttttcagtcaaccgtactagacatttccagggttgtgcaaagatgacatccaga
attggtggttctgttgctgggggaaactggaaatatgctcatggaactgcacattatggg
cgaaatttctctgttaaatggttgaagttatgtgaactatcattccacaaaacacgtcat
ttaaggaatccatacaatgagaacttaccagtgaagataagtagagattgtcaggagctg
gaaccttctattggagagcagctggcatcgttgctttatcttgagccggatagtgaactt
atggctatctcgattgcagctgagtctaaacgagaagaagagaaagcgaagggagtgaat
ccagataatggaggagaaaatccagatattgtcccatttgaagacaatgaagaagaggaa
gaggaagaaagtgacgaagaagaggagagctttggtcatggtgttgggccagctggtcaa
ggcagaggtaggggcagaggtatgatgtggccacctcatatgcctcttgggcgcggagcc
cgacccatgcctggaatgcagggctttaaccctgtaatgatgggtgatgggctatcctat
ggacctgttgcacctgatggttttggtatgccagatctttttggggtgggaccccgtggt
tttgctccgtatggtcctagattctctggtgactttggaggtcccccagcagccatgatg
ttccgtgggcgaccctctcaaccggggatgtttccaggcggtgggtttgggatgatgatg
aatcctggacgtggtcccttcatggggggaatgggagttgcaggtgcaaatccaccaaga
ggtggtaggccagttaatatgcctccaatgtttccaccacctccacccctacctcagaat
gcaaaccgtgttgccaaaagagatccaagagccactgatcgaaatgataggtatggttca
ggatcagagcagggtaagagtcaagacatgctcagtcaaagtggtgcaccggatgatgaa
atgcagtatcagcaaggatacaaagggaaccaggatgatcatcctgctgcgaacaacttc
aagaatgatgacagtgaaagtgaggatgaggcacctaggcgatccagacatggggagggg
aaaaagaaaaggcgaggcacagaagatgttatcacaaaactataa
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integrated database retrieval system
