Cajanus cajan (pigeon pea): 109789528
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Entry
109789528 CDS
T04868
Name
(RefSeq) actin cytoskeleton-regulatory complex protein PAN1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03013
Nucleocytoplasmic transport
ccaj03015
mRNA surveillance pathway
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109789528
09122 Translation
03013 Nucleocytoplasmic transport
109789528
03015 mRNA surveillance pathway
109789528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109789528
03041 Spliceosome [BR:
ccaj03041
]
109789528
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109789528
Spliceosome [BR:
ccaj03041
]
Complex C
Other components
EJC/TREX
109789528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
109789528
NCBI-ProteinID:
XP_020204128
LinkDB
All DBs
Position
1:complement(2796646..2800877)
Genome browser
AA seq
713 aa
AA seq
DB search
MSPKYQILDNRSINQWKVTELRDELKRRRLSAKGLKDDLIRRLDEALRLEREVDEASDKD
DAAEKDEANGFDGHVDGEKESEAVNADAEVVDTTVRDNAKTLEAVEKGNSGVVEPVETGS
VEKIPEVVDHDSDKNDKQDGDTVQVDINNSVSAMEEEVEHKGFPAGGDSANVGEEATDHT
SSVETTITVAKCVLTEVVASGEDSYRAEKNNEDSAAKLENEESKAQLDDEDTKPQMDCDT
KPLHEDPVPDSSVPENQVSEVNPSLGSQVKSDSISTDSVSINQKNELKDTIITDNVKLEQ
DIVRPEMVEEPSSRNVPVYDESHSMDVGGLHEKKASVEENINNVSSPDLNKTNSSDDVGY
PEKLNLDRSSGDDSMEEDLPETKQIDSKFNVDKVESIEKLIVKEEISTIVVGDGLSAEKM
DTSQDVDISPVAPAEKRKFHEQASVGNNEPAKRQRRWNTETVKGPEPQSTTPRPATTPKD
EPIALKRNFSRSDSSVSDDAPKERIVPPSQSSPTNSLRIDRFLRPFTLKAVQELLGKTGN
VSSFWMDQIKTHCYVTYSSVEEAIETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEPP
PTQAASVSTAPTVPPAPPSSQPEPPPRLHREQHPAPATLPPPPPLSKTPPVARERLPSPP
PLPEKVDPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLAAQGKSMRQYVGH
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccaaaatatcagattctcgacaatcgttccattaatcagtggaaggttacagag
ctgagagatgagctgaagaggaggaggttaagtgccaaaggtttgaaggatgatttgatc
aggcgtttggatgaagcccttcgtcttgaaagggaggttgatgaggcttctgacaaggat
gatgctgctgagaaggacgaggccaatggattcgatggtcatgtagatggggaaaaagaa
tcggaggcggttaatgcggatgctgaagtggttgatacaactgtcagggacaatgcaaaa
acacttgaagctgttgaaaaggggaatagtggtgtagttgaaccggttgaaactggaagt
gtggaaaagattccggaggttgtggatcatgacagtgataagaatgataaacaggatggt
gatactgtccaagttgacattaataatagtgtgtcagccatggaggaagaagttgaacat
aagggttttccagctggtggagattctgcaaatgtgggagaggaggcaactgaccatacg
tctagtgtggagaccaccattaccgtcgccaagtgtgtactaacagaagtagtagccagt
ggtgaggattcttatcgtgcagaaaagaataatgaggattcagcagcaaagctggagaat
gaggagtcaaaggcgcagctggatgatgaggacacaaagccccaaatggattgtgacaca
aagcccttgcatgaggatcctgtgcccgactcttctgtcccagaaaaccaggtatctgag
gtcaaccctagtttagggtctcaagtaaaatctgattctatttctactgattctgtgtca
attaatcaaaagaatgaactaaaggatactataattactgataatgtcaaattagaacaa
gatattgttaggccggagatggtggaagaaccatcatccagaaatgtacctgtttatgat
gaatctcattcaatggatgttggagggctgcatgagaaaaaggcttctgttgaagaaaat
atcaataatgtttcaagtccagacttgaacaagaccaatagcagtgatgatgtggggtat
ccagaaaagttgaacttggacagaagttctggtgatgattccatggaagaggatttgcct
gagactaagcaaattgattctaagtttaatgttgataaagtagagagtattgaaaagctt
attgtgaaggaggaaattagtactatagttgtgggagatggtctatctgcagaaaaaatg
gataccagccaagatgttgatattagtcctgttgccccggctgagaaaagaaaatttcat
gagcaagcatcagttgggaacaatgagcctgcaaaaaggcaacgcaggtggaacactgaa
acagttaaaggtccagaaccacaaagcactactcccagacctgctactacacctaaagat
gagccaattgctctgaaacgcaacttctctaggtctgattcctctgtttctgatgatgca
cctaaagaacgcattgttccaccatcacaaagctccccaactaattccctcaggattgat
cgtttcctccgtccatttaccctaaaagcagtgcaagaacttcttggtaagactgggaat
gtcagcagtttctggatggaccaaataaagacccattgctatgttacttactcgtctgtg
gaagaggctatcgagactagaaatgctgtgtataatttgcaatggccaccaaacggtggg
cgtctcttagttgctgagtatgttgatcctgaagaagtgaagatgaagttagaacctcct
cctactcaggctgcctctgtcagcactgctccaacagttcctcctgcacccccctcctca
cagccagagcctccaccccgtctgcaccgggagcagcatccagctccagctacgctccca
cctccacccccattatcaaaaacccctccagtagcaagagagcggcttccatctccacca
ccccttcctgagaaagttgatccacctattgtcactctggatgatctattccgcaaaacc
acagcaactcctcggatctactatttacctttgtctgaagagcaagttgccgcaaaactt
gcagcacagggtaaaagcatgaggcagtatgtagggcattag
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