Cajanus cajan (pigeon pea): 109790372
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Entry
109790372 CDS
T04868
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X2
KO
K12600
superkiller protein 3
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109790372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109790372
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
109790372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_19
TPR_14
TPR_8
TPR_16
TPR_17
TPR_12
TPR_9
ARM_TT21_C
TPR_7
BTAD
TPR_15
TPR_10
TPR_5
Sel1
Motif
Other DBs
NCBI-GeneID:
109790372
NCBI-ProteinID:
XP_020205099
LinkDB
All DBs
Position
Unknown
AA seq
1180 aa
AA seq
DB search
MDSQTHREEEGVEHLFQRLQDSSEDASTHFDIGLFLWEKGGEAKEKAAEHFILSAKLNPK
SGESFKYLGHYYGGVSLDTQRAIKCYQRAVVLNPDDSESGEALCNLLDQGGKESLAVVVC
GEASEMSPRAFWAFRRLGFLQVHQKKWCEAVQSLQHALRGYPTCADLWEALGLAYQRLGR
FTAAVKSYGRAIELDGTMVFALVESGNISLTLGSFSKGVEQFRQALEISPQCVPAQYGLA
LGLLGLAKDCINLGAYQWGASLLEEASGVARESANIFRNISCIWKLHADIQLAYARCYPW
IEDVQELESNKEAFNDSIISWRRTRLLAARHARFSYQRALHLSPWQANIYADIAVTSDLI
TSLDTNYKQDINAWQLEEKMSMGALLLEGDNYEFWLALGCLSDHNALNQHALIRGLQLNV
SLAVAWGYLGKLYRKAGEKQLARQMFDRARSIDPGLALPWASMSVESSVREPEPDEAFES
CSQAVQIIPLAEFQLGLTKLALLSGHLSSSQVFGAIQQAVQHSPHYPESYNLYGLVCEAR
NDYKSAVTFYRLARHAINIGSWCIQISHIRDISINLARSLSKAGNAADALQECENLKKEG
ALDEEGLQVYALSLWQLGENDSALSVAGSLAATLSSMQRTSVATSICFICRLVYYICGLD
AVVTRILKMPMELFQSSKISLVMSAINAFDEKNRLGFVVSSRQYFLKSHEEIVEMHFLTA
LSKLVKNESDCCLDIQSGVAHLRKALHMFPNYSLIRNLLGYLLVSSNELNNCHVATRCCK
LDHLDLSDQKGLKSASDIHGAGAVACYTTGNSSPKFTFPTCIKQCSNHPGAIRYLQKCFH
QKPWNQDACYLLVLNYLQRAREERFPHHLCGILNRLAHVSLSNELYSRTEMSYQYRYFQL
LLCASEISLQCGNHMTCITHARKASELELPDNYLFFAHLLLCRVYAMIGDHLSFQKEYIS
CMDLKTDYHIGWICLKLMECHYELEIDSNAIDLNFEECVKTSGKLWNMWMAVYNLVRGMI
SLQKRDLVSAEEFIAQACSLEGFESCLFLCHGAICMELVRQFDCSQFLSRAVKSLTKVHE
FSLIPLPFVSVLIAQAEGGLGSKERWNRSLGLEWYNWPSEMKPAELYFQMHLLARQSKVD
PNAASSMEFSETPQRWVIRAIHINPSCMRYWRVLQKLIET
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggactcccaaacacacagggaggaagaaggggtggaacatctcttccaacgcttgcag
gattcctcagaggatgcatcaacgcatttcgatattggtttgttcttatgggaaaaagga
ggagaagcgaaggaaaaagctgctgaacattttattctatcggccaaattaaaccctaag
agtggagaatctttcaaatatctgggccattattatggcggcgtttcccttgatactcag
agagctatcaagtgttaccaacgagccgtggttctcaatcccgatgattctgagtctggg
gaagctctatgcaatttacttgaccaagggggaaaagagagtttggcggtggtggtatgc
ggggaagcttctgaaatgtcaccgagggctttctgggcattccgaagattgggtttcctg
caggttcatcaaaagaaatggtgtgaagctgttcagagtcttcaacatgccctacgaggc
tatcctacatgtgctgatttgtgggaggctttgggcctcgcttatcagagactgggcagg
tttactgcagctgtaaagtcttatggccgtgcaattgagttagatggtacgatggtcttt
gctttggttgaaagtggaaatatctctttgactcttggttcatttagcaagggggttgaa
caatttcgacaagctttggagatttcaccacagtgtgtgcctgcacaatatggacttgct
ttggggctgcttggtttggccaaagattgcattaacctaggagcatatcaatggggggct
tcactgttagaggaagcatctggggttgcaagggaaagtgctaatatttttaggaatatc
tcatgtatatggaaactacatgctgatattcagcttgcatatgctagatgctatccttgg
attgaggatgtccaagaattggaatctaataaggaagctttcaatgattctatcatttct
tggaggaggacccgccttttggctgcaagacatgcaaggttttcatatcaacgagccttg
cacttgtctccatggcaagcaaacatctatgctgacattgctgtgacttcagatcttatt
acatcattggacacaaattacaagcaagacataaatgcatggcaattggaagagaagatg
tctatgggagcgttgctacttgaaggtgacaattatgaattctggctggcattgggatgt
ttgtctgatcataatgcactaaatcaacatgctttgatcagaggattgcaattgaatgta
tctctagctgttgcttggggatatcttgggaagctatatcgtaaagcgggtgaaaagcaa
ttggcaaggcaaatgtttgatcgtgctagaagtattgatcctggccttgcattgccatgg
gcaagcatgtcagttgagtcttctgtgagggagcctgaaccagatgaggcatttgagagc
tgttcacaggctgtgcagataatccctttagctgaattccagcttgggctcactaagctt
gctttgttgagcggacatctctcatcttcacaggtttttggagctattcagcaggctgtg
cagcattctcctcactatcctgagtcctataatttatatgggctggtttgtgaggcacga
aatgattataagtctgctgttactttttataggttagcacgtcatgcaattaacattggc
tcatggtgtattcaaatctcacatatcagggacatatcaataaatttggccagatcactt
tctaaggcagggaatgctgctgatgctttgcaggaatgtgaaaatttgaagaaagaaggg
gcacttgatgaagaaggtttacaagtatatgctttgtcattgtggcaacttggtgaaaat
gattcggctctctctgtagctggaagtcttgctgcaactctttcttctatgcaaagaaca
tctgtggcaacatccatttgtttcatttgtagattagtatactacatatgtggtctggat
gcagtcgtcactaggattctgaaaatgccaatggagctatttcaaagttcaaaaattagt
cttgttatgtcagctatcaatgcttttgatgaaaaaaatcgtcttggatttgttgtctca
agtagacaatattttctcaaatctcatgaagaaattgttgagatgcactttttaacagca
cttagtaaactggtgaaaaatgagtctgattgctgccttgacattcagagtggagttgct
cacctcagaaaagccctgcacatgttccctaactatagtttgataaggaaccttcttggt
tacctcttggtatccagtaatgagttaaacaattgtcatgtggcaacaaggtgttgtaaa
ctggaccatcttgatctttctgatcaaaaaggtttgaaatcagcttctgatattcatggt
gctggagcagttgcttgctataccactggcaacagcagtccaaagtttacttttccaact
tgtataaagcagtgttccaatcatcctggagctatcagatacctacagaagtgctttcat
cagaaaccatggaatcaagatgcctgttacttgcttgttctgaactatcttcaaagggct
cgtgaagaaagatttcctcatcatctttgtggcatactaaatcgtctagctcatgtttcc
ctttcaaatgaattatatagcaggacagaaatgtcgtatcaatatagatactttcaactt
ctactttgtgcttctgagatcagtttacaatgtgggaatcatatgacatgtatcacccat
gccagaaaggcttctgaacttgagcttcctgataattatttattctttgcacatctacta
ttgtgccgtgtgtatgccatgataggtgatcatctaagttttcagaaagaatatataagt
tgtatggatctcaaaacagattatcacattggttggatctgtctcaaacttatggaatgt
cattatgaactggaaattgattcaaatgccatagacttgaactttgaagaatgtgttaaa
acaagtggaaaattgtggaatatgtggatggctgtatataacctggtgagaggtatgatt
tccttgcagaagagggatttagtctccgcagaagagttcatagcacaggcttgttcatta
gaaggttttgagagctgcctctttctatgtcatggtgccatctgtatggagcttgtccgg
cagtttgattgttctcagttcctatcacgggctgttaagagtcttacgaaagttcatgag
ttttcacttattcccttgccttttgtctcggtattgatagctcaagcagaaggaggcctt
ggttctaaggagaggtggaacagaagtcttggcctcgaatggtataattggccatcagaa
atgaagcctgcagagctatactttcaaatgcatttgcttgcaagacagtcgaaagttgat
ccaaacgctgcatctagcatggagttctctgagactcctcagagatgggttattcgagca
attcacattaacccttcttgtatgcgatattggagggttctacagaagcttatcgagact
tga
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integrated database retrieval system
