Cajanus cajan (pigeon pea): 109790441
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Entry
109790441 CDS
T04868
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109790441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109790441
03012 Translation factors [BR:
ccaj03012
]
109790441
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109790441
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109790441
Translation factors [BR:
ccaj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109790441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
T2SSE
PhoH
ABC_tran
AAA_11
NPHP3_N
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
109790441
NCBI-ProteinID:
XP_020205176
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MSSSHIPILAMNSHGVDHVAAENGVNCDAEFGASSLLSVFPSDEWRQKLSMLLDDKNRQE
LISREKKDRRHFQQIEALATRMGLYSNMYAKVVVVSKVPLPNYRYDLDDKRPLREVNLPN
SLLRRVDGYLQEYLSQKSRMKESFTDLWSAKQSNSGSIGTDEGLFDPHQSLASSRAVGEK
ILRQRSLQMRDQQRAWQESPEGRRMLEFRSSLPAYKEKEAILSAISRNQVLIISGETGCG
KTTQLPQVILESEIESIRGAVCNIICTQPRRIAAISVSERVASERGEKLGESVGYKVRLE
GMRGRDTHLLFCTTGILLRRLLDDRNLKGVTHITVDEIHERGINEDFLLVVLKDLLACRP
ELKLILMSATLDAELFSSYFNGAATMKIPGFTYPVRTHFLEDILEMSGYRLTADNQIDDY
GQERIWKMNKQAPRKRKSQISSAVEDALRAADFNDYSLQTRESLSCWNPDCIGFNLIQYI
LCNICEHERPGAILVFMMGWDDINALKEKLLTHPVLSDPSRVLLRMCHGSMDSLEQRLIF
EEPEDGVRKIVLATNIAETSITINDVVFVLDCGKVKESSYDALNNTPCLLPTWISKVSVQ
QRRGRAGRVQPGECYHLYPRCVYDAFAESQLPEILRTPLQSLCLQIKSLKLGSISEFLSR
ALQSPELLAVQNAIEYLKIIGALDEDENLTILGHNLTVLPMEPKLGKMLIFGVIFNCLDP
ILTIVAGLSVRDPFLTPLDKKDLAEEAKSQFSNDYSDHLAILRAYEGWKDAEIDFAGHEY
CWKNFLSAQSMRVIDALRMEFLSLLKDIGLVDSNKTCCNAWSYDKYLIRAAICYGLYPGI
CSVVHKDKSFSLKTMEDGKVFLHSNSVNARDTRILYPWLVFNEKIKVNSVFLRDSTAVPD
SVVLLFGGSISKGDTDGHLKMSRGYLEFFMKPAVADMYQSIRKELENLIQRKLQSPLMSI
HSFHELLFAIRLLICNDKCEGRFVFSSQLLKPSMMALEQKLVSRTDSGPGGDNSKGQLQT
LLTRAGYGAPFYITKQLKNNQFQATVEFNGVQIMGHPYNNKKNAEKDAAAEALQWLMDRR
QTGNEDVNHMTMLLKKSKKDHN
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcttctcacattccaattctcgccatgaattctcacggtgttgatcatgttgct
gctgagaatggggttaattgtgatgctgaatttggggcttcttcactactaagtgttttc
cccagcgatgagtggaggcagaaattgagcatgcttttagatgacaagaataggcaagag
ttgatctcgagggagaaaaaggatagacgtcattttcagcagatagaggctttggcaacc
agaatggggttgtatagcaatatgtatgcgaaggtagttgttgtcagtaaagtgccactt
ccaaactacagatatgatttggacgataaacgcccgctgagggaggtgaacctacctaat
tctttgttaaggcgagttgatggataccttcaagaatacctaagccaaaagtcaagaatg
aaggaaagctttacagatttgtggtctgcaaaacaaagcaatagtggtagtattggtaca
gatgaagggctttttgacccacatcagtcactagcatccagtagggctgtaggggagaaa
attctacgccagagaagtttacaaatgcgtgatcagcaacgagcttggcaggaatcgcca
gaaggaagaagaatgctagaatttcgtagcagcctacctgcttataaagagaaggaagcg
atattatcagccatttcaaggaatcaggtacttatcatttcaggtgaaacaggttgtggt
aagacaacacaacttccacaagttatcctagaatccgagatagaatcaattcgtggagca
gtgtgtaatattatatgcacacaaccacgacgcattgctgcaatttctgtttctgagaga
gttgcctctgaaagaggagagaaattgggtgaatctgttggatataaagttagacttgaa
ggtatgagagggagagatacccatcttctcttttgcaccacaggcatattattaagaaga
ttactagatgatagaaacttaaaaggtgtaactcatattactgttgatgaaattcatgag
cgtgggatcaatgaagattttctgcttgttgtccttaaagatctcctagcctgccgacca
gaactgaaattgattttaatgagtgctacccttgatgctgaactcttctcttcatatttt
aatggtgctgcaactatgaagattccgggtttcacataccctgttagaactcattttttg
gaggatattttggaaatgtcgggatacagattgactgctgacaatcaaattgatgactat
ggtcaagaaaggatttggaaaatgaacaaacaggccccaagaaaaaggaaaagccaaatt
tcttctgctgtagaggatgcattaagagctgctgatttcaatgattacagtctgcagaca
agggagtctttgtcttgttggaatcctgattgtattggttttaacctcatacaatatatc
ttgtgcaatatatgtgagcatgaaagacctggtgctattttggtttttatgatgggatgg
gatgatataaatgctctcaaggagaagctcctaacacatcctgtcttgagtgatccaagc
cgagtgttgttgcggatgtgtcatggctcaatggacagtttggagcagaggttaatattt
gaagaacctgaagacggagtacgaaaaatagtcctagcaacaaatattgctgaaactagt
atcacgataaatgatgttgtttttgttcttgactgtgggaaggtgaaagaatcatcatat
gatgcactgaataatacaccttgtttgcttcccacctggatctctaaggtttcagttcaa
caaagaagaggaagagctggtcgggttcaaccaggagaatgttaccatctttatcctaga
tgtgtatatgatgcctttgcagagagtcaattacctgaaattttgaggacgcccttgcag
tctctctgcctgcaaatcaaaagtttgaaactaggaagtatatctgagtttttgtctagg
gctttacagtctcctgagttacttgcggtgcaaaatgcaattgaatatttaaaaataatt
ggtgctttggatgaggatgagaatctgactattttagggcacaacttgacagtgcttccc
atggaacccaaacttggcaagatgcttatatttggtgttatcttcaattgcctggatccc
atattaactattgttgctggccttagtgttagagatccttttctaacacctttggataaa
aaggatcttgcagaggaagcaaagtctcaattttccaatgattacagtgatcatcttgcc
attttgagggcctatgagggttggaaggatgctgaaatagactttgctggacatgaatat
tgctggaaaaattttctttctgcgcaatccatgagagttattgatgctcttcgaatggaa
ttcttatccctgctcaaggatattggattagttgatagcaacaagacttgctgcaatgct
tggagctatgataagtatctcatacgagcagctatttgctatggcctatatcctggaatt
tgctcggttgtgcataaggataagtcattttctctaaagacaatggaggatggaaaggtg
tttctacattcgaattcagtgaatgctcgggatactagaattctatatccatggctagtg
tttaatgagaagataaaagtaaactctgtatttctccgtgactcaacagctgtgcctgat
tcagtggtgcttctttttggtggaagcatctcaaaaggagatactgatggtcacttgaaa
atgtcaagaggatatttagagttttttatgaaacctgctgttgctgacatgtaccagagt
attaggaaagaacttgaaaacctcattcagaggaagctgcagagtccattgatgagcata
cactcattccatgagctcttatttgctatacggttgctgatttgcaatgacaaatgtgaa
ggcagatttgtatttagtagccagctgcttaaaccatcaatgatggcattggagcaaaaa
ttggtttcaagaacagacagtggacccgggggtgataattctaaaggtcagcttcaaacg
ttgctgacacgagctggatatggtgcacccttctacatcactaagcaattgaagaacaac
cagtttcaggctacagttgagtttaacggagtccaaataatgggtcatccctataacaac
aagaagaatgcagagaaagatgctgcggctgaggcactgcagtggcttatggatagaaga
caaacaggaaatgaggatgtcaatcacatgacaatgttgctgaagaaaagtaagaaagat
cataattga
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integrated database retrieval system
