Cajanus cajan (pigeon pea): 109791789
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Entry
109791789 CDS
T04868
Name
(RefSeq) sm-like protein LSM4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109791789
09123 Folding, sorting and degradation
03018 RNA degradation
109791789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109791789
03041 Spliceosome [BR:
ccaj03041
]
109791789
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109791789
mRNA degradation factors
5'-3' decay
Lsm complex
109791789
Spliceosome [BR:
ccaj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109791789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
109791789
NCBI-ProteinID:
XP_020206729
LinkDB
All DBs
Position
2:complement(23682560..23684819)
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AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRQAKGIGRGFDE
GGAKGQGGRGRGGPGGKPGGNRGAGRGRG
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccctttctcttctcaagactgcccaaggccacccaatgttggtggaactgaaa
aatggggagacttataacggccatttggttaattgtgatacatggatgaacattcatctc
cgagaagttatttgcacatcaaaagatggagatagattttggcgtatgcctgagtgctac
attcgtggcaataccattaagtaccttcgggttcctgacgaggttattgataaagtccag
gaagaaacaaagagccgcactgatcgcaaacctccaggtgtgggacgtggaaggggaaga
ggtagggaggatggtcctggtggacgtcaagcaaaaggaattgggcgtggctttgatgaa
ggtggagctaaaggacaaggaggacgtggcaggggtggtccgggtggaaagcctggtgga
aacagaggtgcagggcgaggtagaggttga
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