KEGG   Cajanus cajan (pigeon pea): 109791789
Entry
109791789         CDS       T04868                                 
Name
(RefSeq) sm-like protein LSM4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03018  RNA degradation
ccaj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109791789
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109791789
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccaj03019]
    109791789
   03041 Spliceosome [BR:ccaj03041]
    109791789
Messenger RNA biogenesis [BR:ccaj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109791789
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109791789
Spliceosome [BR:ccaj03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109791789
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 109791789
NCBI-ProteinID: XP_020206729
LinkDB
Position
2:complement(23682560..23684819)
AA seq 149 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRQAKGIGRGFDE
GGAKGQGGRGRGGPGGKPGGNRGAGRGRG
NT seq 450 nt   +upstreamnt  +downstreamnt
atgctgcccctttctcttctcaagactgcccaaggccacccaatgttggtggaactgaaa
aatggggagacttataacggccatttggttaattgtgatacatggatgaacattcatctc
cgagaagttatttgcacatcaaaagatggagatagattttggcgtatgcctgagtgctac
attcgtggcaataccattaagtaccttcgggttcctgacgaggttattgataaagtccag
gaagaaacaaagagccgcactgatcgcaaacctccaggtgtgggacgtggaaggggaaga
ggtagggaggatggtcctggtggacgtcaagcaaaaggaattgggcgtggctttgatgaa
ggtggagctaaaggacaaggaggacgtggcaggggtggtccgggtggaaagcctggtgga
aacagaggtgcagggcgaggtagaggttga

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