Cajanus cajan (pigeon pea): 109792178
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Entry
109792178 CDS
T04868
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
ccaj
Cajanus cajan (pigeon pea)
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaj03021
]
109792178
03036 Chromosome and associated proteins [BR:
ccaj03036
]
109792178
Transcription machinery [BR:
ccaj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
109792178
Chromosome and associated proteins [BR:
ccaj03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
109792178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HHH_9
Tex_central_region
HTH_44
Tex_N
SAND_ULT1
Motif
Other DBs
NCBI-GeneID:
109792178
NCBI-ProteinID:
XP_020207144
LinkDB
All DBs
Position
Unknown
AA seq
1610 aa
AA seq
DB search
MLRGTREAPHEEQEKIRKKGKSKESVNFEGIDEDEAGLNVFETDGFIIDVDEDEDVEAEE
GQNPKQTQKKKKRRKSSKIIILDDEDLELIRDNKSINQETTSVGKFKRFRMAGIDSEQME
YSSDDDGGSLFEDNAEDESNDDAEDDMADFIVDEEDVIYGKGYSLRQKQFKGTKHSSSLS
KETKHRFGKAVQFREVQAQATKSDDPNKYESFIPTNMYLAGEDNSVNDTDIPERMQIIQG
IVESSIDRLSIEEESSWILSQLASNINPLFSEANSCRLVSTAKREDVINFLELHHTGKYD
IPFIAMYRKEQCPSLLEDPKPDESENILLTDIERKSKLKWHKMIWIIKELDTKWLLLQKR
KSMLMRYYKQHFEEQNQMSFLVEESSFYKQIFDSTTNMLKKAETDGEIDDIDRIFNLHFP
QAEEFLDTGYKRPLAKSYYSNCNKAGLWSLARKFGSPEKFSSLVSLENVGSDNEEDPQES
PEEIASIYKCETFQTSEAVLRGARHMAAVMLSSEIPFRKFVRTIFMDKVLVSTSPTLEGN
ITIDSFHEFSGVKWLRDKPLSKFEDSQWLFIQKAEEEKLLQVKIQLPDRTINELTMTCND
AYLKESEGISTRLWNEQRKLILQDAISKFLLPSMEKEARAMLNAKAKNWVLMNYAMQLWN
RVTVAPYLNNESGTAQRKGVMACCWGNGKPGTTFVMLDSGGGLVDVMHARSLALRSQNII
DQQSRKNDQHRVLKFLTTYQPNVIVLGADNVSCLRLREDINEIISMLSEHNFQNSSQGMI
GVPAVVLGEEGLPRLYEVSEISVSQFPRQDGIVKRAVALGRFLLNPLAMVATLCGEKKEV
LSWKLNPLQKFLTSDEKLDIIEWVMTDVTNQVGVDINLAIRHNWLLAPLQFVSGLGPKKA
GILRRELLGGTEVRNRRDFAKFGLNTEKVFCNAVGFLRVYCNDENFLDNVSNTLDCTRIH
PESYNLAEELARAIYRQRVLENAEADDTQVNAIECIQNDPNLLECFDLNDYANRLETEKG
EYKRETLFDIKMELLNGFKDPRRPYAEPTQEEEFYMITGETVDMLVEGKRVQATVRHVQS
QQAFCVLESGMTGVLFKDDFSDETENISLTDKLREGAVLTCKIKLIDKNRCRVNLTCKAS
ELKNDGEQSFHDMDPYYHEGNINSLSQLEGTDKMELGNKHFIPRKISHPNFQNISADQAK
QFLADQDVGEYIFHPSSRGLCYLTLSLKIFNEVYVHKDIVESGKSNSIKNLLGLGKTLKV
GEEIFEDIDQVIEHYVKPLVVHLKAMINFRNFKKGSKAEVDDLLKLEKNEYPSRMPYGFG
ISYEHPGTFILSYIRSTNPRHEFVAIYPKGFKFRKQIFKSIEQLVAYFQDHIDDIVPPPK
SCTKVGSFKESMSGGWRSNNVDQHKQSIADNEHGDGRGGRSRGRGRGRGGRDRGFGPRSG
SSDDKDGNSFPSSNWGFGSRDPSDNSFAAAGNSWEGNGGRQGRGRERGRGSGRGGRGSQG
RVTWGENSFESGRHADGGYGGDSGQEQGRGRGRGRGRGRRGGQGDGQGRGRWGGNNSNQE
RNWNEDSRGKGSWEASDAGNAGSGNENLGWSVTHGNNATPSGSGWGGKSW
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atgctaagaggaacgagggaagcgccgcatgaagaacaagagaaaatacgaaagaaagga
aaaagtaaagaatctgtaaacttcgaaggtatcgatgaagacgaggcaggtttgaatgtt
tttgaaactgatgggtttataattgatgtggatgaagatgaagatgttgaagcggaagaa
ggtcaaaatccaaaacaaacgcaaaagaagaaaaagaggaggaaatcgtcaaaaatcatt
attcttgacgatgaggatcttgagttaattcgcgataacaagagcatcaatcaagaaaca
acgagtgttggaaaattcaagaggtttagaatggctggcattgactctgaacagatggaa
tactcttctgatgacgacggaggatcactctttgaggataatgctgaagatgagtctaac
gatgatgcagaggatgatatggcagattttattgtggatgaagaggatgtcatctatggg
aagggatattctctcagacaaaagcagtttaaaggcacgaaacattcatcttcactttca
aaagaaacgaaacataggtttgggaaggccgttcagtttagggaagttcaagctcaagct
accaagtccgatgatcctaacaagtatgaatcattcatccctactaacatgtacctagcc
ggagaggataactctgtaaatgatacagacatacctgagaggatgcagataattcagggt
attgtagaatcttcaattgacagactgagtatagaagaagaaagttcttggatactaagt
caactagcatccaacataaatcctttgttcagcgaggctaactcttgtagactagttagt
acagcaaaaagggaagatgttattaatttcttggaattgcatcatacagggaaatatgat
attccatttattgcaatgtaccggaaggaacaatgcccaagtcttctagaagatccaaaa
ccggatgagtcagaaaacatattattgactgatattgagagaaaatccaagttgaaatgg
cacaagatgatctggataatcaaagaattggatacaaagtggcttcttcttcagaagcgg
aagagcatgctcatgagatactataaacaacattttgaggaacaaaatcaaatgtctttc
cttgttgaagaatccagtttttataaacagatttttgattcaaccactaatatgctcaag
aaggctgaaacagatggagagattgatgatattgataggatttttaatttgcattttcca
caagctgaggagtttcttgatactggttataaaaggcctctggcaaaatcatactattcc
aattgcaataaggcagggctatggtcacttgcaagaaaatttggcagtcctgagaaattt
agttctttagtttcccttgagaatgtgggatcagacaacgaagaagatccgcaggaatct
ccagaggagatagcttcaatatataagtgtgaaacctttcaaacttcagaggctgtactt
agaggggctaggcacatggctgcagtgatgttaagcagtgagattcctttcaggaaattt
gtccgtaccatatttatggataaggttttagtctcaactagcccaacattggaaggaaat
ataacaatagattcctttcatgaattttctggtgttaagtggctgcgggacaaacctctc
tcaaagtttgaggattcccagtggctattcattcagaaggctgaagaagagaagcttctt
caagttaaaatacagttgcctgatcgtaccataaatgaattgacaatgacctgtaatgat
gcctatctcaaagaaagtgaaggaatatctactaggctttggaatgaacagcgcaaatta
atcctgcaggatgccatttcaaaattccttttgccatctatggaaaaggaagcacgggca
atgttaaatgctaaggctaaaaactgggtattaatgaattatgcaatgcaattgtggaac
agggtcactgtggcaccatatttgaacaatgaaagtggcactgctcaacggaagggagtc
atggcatgttgttggggaaatggaaagccaggtaccacatttgtcatgttggactctgga
ggtggattggttgatgtgatgcatgctcggtcacttgcactaagatctcagaatatcatt
gaccagcagagcaggaaaaatgatcaacatcgtgtcctcaagtttctaacaacttatcag
ccaaacgttattgtgctaggagcagataatgtgtcctgtttaaggttgagagaggacatt
aacgagattatttccatgttgtcggagcacaattttcaaaattccagtcaaggaatgata
ggagtaccagcagttgtattaggggaggaaggcttgcctcgtctttatgaagtttcagaa
atttctgtgagccagtttcccagacaagatggcattgttaagagagctgtggctcttgga
cgtttccttctaaacccactggctatggttgcaacactatgcggagagaaaaaagaggtt
ctgtcttggaagttgaaccccttgcagaaattcctaacaagtgatgagaagttagatata
attgaatgggtcatgacagatgttacaaaccaagtaggtgtagacataaatttagccatc
agacataattggctgttggctcctttgcagtttgtatctggtcttggacccaagaaagcg
ggtattttgcgtagagaattacttggcggcacagaagtgagaaacagaagggattttgct
aaatttgggctgaacacagagaaggttttctgcaatgctgttggctttttacgggtttat
tgcaatgatgagaactttcttgacaatgtcagcaatactctcgattgtacaagaattcat
ccagagtcatataatcttgctgaggaactagcaagagcgatttacaggcaacgtgttctg
gaaaatgcagaagctgatgatacgcaagtaaatgctattgaatgtattcaaaatgatcca
aacctgctcgagtgttttgatctaaatgattatgctaatagattggaaacagaaaaaggt
gaatacaaaagggagactctttttgacataaagatggaattacttaatggatttaaagat
ccgaggaggccttatgcagaaccgactcaagaggaggagttctatatgataactggagag
actgtggatatgctagttgaaggaaaaagagttcaggcaacagttcgtcatgtgcagtct
caacaggcattttgtgtgcttgaatctggaatgactggagtactttttaaagatgacttt
tccgatgaaactgagaatatctctttaacagacaaattgcgtgaaggggctgtgcttaca
tgcaagatcaaactaattgataagaacagatgccgggtcaatctgacttgtaaagcgagt
gagttgaagaatgatggtgagcaaagtttccatgacatggatccttattatcatgaagga
aacatcaattcactgagtcagctggaaggaacagacaagatggagcttggaaataaacat
ttcataccccggaagatttctcaccccaattttcaaaatatatctgcagatcaagcaaaa
cagttccttgcagatcaagatgttggggaatatatttttcacccaagctcaaggggccta
tgttatttgaccctatctcttaaaatttttaatgaagtttatgtacacaaagacattgtg
gaaagtggaaagagtaatagtattaaaaatttgcttggacttggaaagacattaaaagta
ggagaggaaatatttgaggacatagatcaggttattgaacattatgtcaaaccattggta
gttcacctgaaagctatgattaattttcgaaattttaagaaaggctcgaaagctgaggtt
gatgatctgttgaaacttgagaagaatgagtatccaagcaggatgccatatggctttggc
atttcatatgagcatccgggcactttcatcttgtcttacattagaagtacaaatccacgt
catgagtttgttgctatctatccaaaaggattcaagtttaggaagcaaattttcaaaagc
attgagcagctggtagcatattttcaagatcatatcgatgatattgttccaccaccaaaa
tcctgcacaaaagttggatcatttaaggagtcaatgtctggaggatggagaagcaacaat
gtagatcagcacaagcaatcaatagctgacaatgagcatggggatggtcgtggtggccgc
agccgtggacgtgggcgtggccgtggaggtcgtgaccgtggatttggccctcgatctggc
tctagtgatgacaaggatggcaatagttttcctagttcaaattggggctttggttccaga
gaccccagtgataattcctttgctgcagcaggtaatagttgggaaggcaatggcgggaga
cagggtaggggaagggaaagggggagagggagtggaagaggaggtagaggaagccaagga
cgtgttacttggggtgaaaatagctttgagagtgggaggcatgcagatggtggctatggt
ggtgatagtggtcaggagcaaggaagaggacgaggaagaggaagagggagaggaaggaga
ggaggccaaggtgatggccaaggacgtggtcgttggggtggaaataattcaaaccaagaa
aggaactggaacgaagacagcagaggaaaaggaagttgggaagcctctgatgctggtaat
gctggatctggaaatgagaacttaggatggagtgttactcatgggaacaatgcaactcct
tctgggagtggatggggaggtaaaagttggtaa
DBGET
integrated database retrieval system
