KEGG   Cajanus cajan (pigeon pea): 109792216
Entry
109792216         CDS       T04868                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109792216
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccaj03041]
    109792216
Spliceosome [BR:ccaj03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    109792216
 Complex C
   U5 SnRNP specific factors
    109792216
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_WDHD1_1st EIF3I WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st WD40_RFWD3 eIF2A Beta-prop_RIG_1st Beta-prop_HPS5 Beta-prop_WDR75_2nd Beta-prop_DCAF12 Beta-prop_Nup120_160 Beta-prop_NWD2_C PEP5_VPS11_N Nbas_N
Other DBs
NCBI-GeneID: 109792216
NCBI-ProteinID: XP_020207201
LinkDB
Position
2:7493019..7496373
AA seq 345 aa
MQVFPSEGESALSVVGPRPMEWSAVPYSAPQAPGPNGKQRTSSLESPIMLLSGHQSAIYT
MKFNPAGSVVASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDK
TLRAWDVETGKQIKKMVEHLSYVNACCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFP
DKYQITAVGFSDASDKIFTGGIDNDVKIWDLRKGEVTMTLQGHQDMITGMQLSPDGSYLL
TNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYI
WDTTSRRILYKLPGHNGSVNECVFHPNEPIIGSCSSDKQIYLGEI
NT seq 1038 nt   +upstreamnt  +downstreamnt
atgcaagtttttcccagtgaaggtgaaagtgctttgtcagttgttggtccaaggccaatg
gaatggtctgctgttccatatagtgcccctcaagctcctgggccaaatggaaagcagcgg
acctcaagtttggaatcaccaatcatgttgctatcaggtcaccagagtgctatatataca
atgaagttcaatccagcaggatcagtagttgcatctggatctcatgacagggaaattttc
ctctggaatgtgcatggggattgcaagaacttcatggttttgaaaggtcacaagaatgca
gttttagatcttcactggactacagatgggacacagatagtctctgctagccctgataaa
acacttagggcatgggatgtggaaacaggaaaacaaataaaaaagatggtagaacatctc
tcatatgttaatgcatgctgtccttcccgaaggggaccacctcttgtggttagcggctct
gatgatggaactgctaaattatgggatatgcgtcaaaggggttccatccaaacattccca
gataaataccagattacagctgttggtttctctgatgcatcagataagatcttcaccggc
ggtattgataatgatgtcaaaatttgggatttgcgtaaaggtgaagttaccatgacactt
caaggtcatcaagatatgattacaggtatgcaattgagtcctgatgggtcctatcttctt
acaaatggcatggattgcaagctttgcatttgggatatgcgcccgtatgctccacaaaat
cgctgtgtgaaggtgttggaagggcatcaacacaactttgaaaagaacttattgaagtgt
agttggtctcctgatggaagcaaggtaacagctggtagttctgatcgaatggtttacatc
tgggataccacttctcgccgcattttgtacaagcttcctggtcacaatggatctgttaat
gagtgtgtttttcatcccaatgaacctattattggatcttgcagtagtgacaagcagatt
tatcttggtgagatatga

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