Cajanus cajan (pigeon pea): 109792560
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Entry
109792560 CDS
T04868
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03015
mRNA surveillance pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109792560
09123 Folding, sorting and degradation
03018 RNA degradation
109792560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109792560
03041 Spliceosome [BR:
ccaj03041
]
109792560
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109792560
mRNA cycle factors
Stress granule specific factors
109792560
Spliceosome [BR:
ccaj03041
]
Complex C
Other components
Complex C specific factors
109792560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_occluded
RBD_DEAH11
Motif
Other DBs
NCBI-GeneID:
109792560
NCBI-ProteinID:
XP_020207570
LinkDB
All DBs
Position
Unknown
AA seq
585 aa
AA seq
DB search
MAQTQEVSGANHRLQTNTALYVGDLHRNVTKDELYNLFNQIGNVSSVKICENNLTGESLG
YGYVNFSDPLIADKAIEELNFTPLYGKPIRIMNCNRDPRVRNNDAANLFVKNLDKAVDHK
ALRDMFSPFGTIVSYKIATDDSGESKGFGFVQFETEQSAKNATYSLNGTMMNGKQVYVGP
FVRKENRESTSAASGDKFTNVYVKSQSISTTADDLKRIFGEYGAITSAVVMKNSEGVSKC
FGFINFASADDAAKAVGELNGKTFDGKEWYVGKAMKKSERLLELKEKYGGSEKESAANLY
VKNLNDSIGDAELKDLFLKFGTITSCKVMQDEKGFSRGSGFVAFSKQREAIQALAMMNGS
IVAGKPLYVSFAERKAERKARLQQNFSQMRPTQTAPHVALAPRLLPFPLGSHSMGEEYLY
GQTPPFIIPRQGEFGYQQHCVPGMRLVGQEPGGHGGAGAPMPLQPLVQQQMLPRGPFVYH
HAHGPVAYGTGGQAMPFQSLVTALANASPEMQRQILGDALYPLVENLVHDSTTTGRVTGM
LLDLDQPEVLHLLEEPNAFRIKVDEMINTLRDKTIDRLKSISILD
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaactcaagaagtttccggtgcaaaccaccggctgcagaccaacaccgctttg
tatgtcggcgatcttcaccgcaacgtcaccaaagacgagctctacaatctcttcaaccag
attggcaatgtttcttccgttaagatatgcgagaacaacttaaccggagaatctctcggt
tacggctacgtcaatttctctgacccactcatcgcggataaagcaatagaagagctgaat
ttcactccgttgtatggtaaacctattagaataatgaactgtaaccgggaccctagagtt
cggaacaatgatgcagctaatctttttgtaaagaatttggataaggcagtggatcacaag
gctttacgggatatgttttctccctttgggactattgtttcttacaagattgcaacagat
gattctggcgagtcaaaaggatttggttttgtgcagttcgagactgaacaatctgctaaa
aacgcaacttactcgttaaatggtaccatgatgaatggtaaacaggtgtacgtgggtcct
ttcgtgcggaaggagaatagagagagtacgagtgctgcaagtggcgacaagtttaccaac
gtctatgtgaaaagccagtccatttcaactacggctgatgacttgaagagaatttttgga
gagtatggagctattacaagtgctgtagtgatgaaaaattcagaaggtgtatcgaaatgt
tttggtttcatcaattttgcaagtgcagacgatgccgctaaagccgtgggggaactaaat
ggaaagacatttgatggtaaagagtggtatgttggaaaagccatgaaaaaatctgaaagg
ctgcttgaattgaaagaaaaatacgggggaagtgagaaggagagtgctgcaaacttgtat
gtaaagaacttgaacgattctattggtgatgcagaactcaaggacctgttcttaaaattt
ggtacgataacctcgtgcaaggttatgcaagatgaaaaaggcttcagtagaggatcagga
tttgttgcattttcgaagcagagggaagcaattcaggctcttgctatgatgaacggttca
atcgttgcgggcaaacctctctatgtttcctttgcagagagaaaagcagagagaaaagca
aggttgcagcaaaacttttcacaaatgaggccaactcaaacggcccctcatgttgcactt
gcacctcgactgctaccattccccctggggtctcactcgatgggggaagaatatttgtac
gggcaaacacctccattcatcataccacgtcaaggtgaatttggttaccagcagcattgt
gttcctggaatgagactagttggtcaggagccaggaggacacggaggagcaggtgctcca
atgccacttcaaccattggtgcaacaacagatgcttccaaggggaccctttgtctatcat
catgctcatggtccggtggcttatggcacgggtggacaggcaatgccctttcagagcttg
gtcacggcccttgccaatgctagtcctgaaatgcagagacagatccttggtgatgcttta
tacccgttagtagaaaatctggtgcatgactcaaccacaacaggaagggttactggtatg
cttttagacttggaccagcctgaggtattacatctgcttgaggaaccaaatgctttcagg
atcaaagttgacgagatgataaataccttgagagacaaaacaattgatagactcaagtca
atctctatccttgattaa
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integrated database retrieval system
