Cajanus cajan (pigeon pea): 109792655
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Entry
109792655 CDS
T04868
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109792655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaj03021
]
109792655
Enzymes [BR:
ccaj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109792655
Transcription machinery [BR:
ccaj03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
109792655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
109792655
NCBI-ProteinID:
XP_020207668
LinkDB
All DBs
Position
Unknown
AA seq
1642 aa
AA seq
DB search
MVLTIEGATNSVEAVAFSFLTDDELRRSSRVKITNPVLLDSLLHPVPAGLYDAAFGPLDE
KSTCKSCGQTSKNCPGHFGHIELVSPVYNPLMFNILSNIIQRTCFSCHHFQASRQEVDLR
TSQLELIMKGDIVKAKSLDSINQDESIHPGDGDESHSCAEQLGDNWTSLQFSEAMSVLRK
FLLRKYRKCQNCGVINPRISKPTFGWFHMNVLSADQARANTVRAVASETANDDISLGGGD
TTDEEDITSAETAKRDNRKSRKLSYKLAAQSKLSGSLLPSQVKDILELLWENEARLCSYI
SDIQDQGFGKKAGHSMFFLENIFVPPIKFRPPTKGGDNVMEHPQTVLLIKVLQCNISLGD
AHLNKSDPSKVLSRWMDLQQSVNVLFDNKTASGQRDVATGICQLLEKKEGIFRQKMMGKR
VNFACRSVISPDPYLAVNEIGIPPYFALRLSYPERVTPWNTVKLRNAILNGPESHPGATH
YEDKVSTVRLPPKGKLLSLTARKLPSSRGVILQHGKIADHEFEGKVVYRHLKDGDVVLVN
RQPTLHKPSIMAHIVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNI
VNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFY
GKHGQKVFVSNSESEMFLFPPAIWRPEPLWTGKQVISALLCYITRGSPPFTVEKNTKIPP
NFFKTQIREGKRYNLDTSRKKDEPDEDKLLIYKNDLVRGVVDKAQFGDYGIIHTVQELYG
SNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMITEGKDIERMNQLKSCEEIGDIVHREFT
GVMDNDNIDPITLQLNIEKKIRCNGEAALTYLDRKMISNLNSRTSSGVLKELLSEGILKP
SGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFSPWDCSPRAG
GFIIDRFLTALHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKSLECLKVCYDHTVR
DADGSIIQFHYGEDGVDVHQTSFITKFEALSTNKELFYSNCCRQIDRSSPYINKLPDALK
AKAENFIRDLSSKGKNLGSMKRREFLKLMEHKYVSCLAQPGEPVGVLASQSVGEPATQMT
LNTFHLAGRGEMNVTLGIPRLQEIVMAAARDIKTPFMTCPLRPNKSMEDAICLADKLKKI
TVADIIKSMKVSVIPVTVLGGQVCSIYKLVMKLYKPKQYPKYTDITLEDWEDTLRVVFAR
ELEDAIENHMTLLSKISGIKKFKTPQSHHSNSSESAHSNESEFEKKGQINDDDDGVVEDT
EGYEDLGSDAQKRKQQGTDEVDYEDGPEEETRDGELSEEIDGDEEGSDTDVNENDNNVTL
DANNSEGLQKPSKSKSIGEKDNKQKRKSEPASKKYDRAVFVKAKGMHFEIHFKFTGEPDI
LLTQIAQRTAKKVCIQNFGKVGECKAITCKESGVVYYGEDGRKRDDIPASVKEKIPALQT
SGVHFKTFWELEDSLDVRYIYSNNVYAMLNAYGVEAARETIIREIQNVFKSYGISVNIRH
LTLIADFMMHSGDYRPMNRTGSIADSTSPFIKMCFETASKFIVEAAYHGQVDNLETPSSR
ICLGLPVKMGTGCHDLIQKLEI
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atggtgctcacaatcgagggcgcgacgaattccgtcgaggcggtggcgttcagttttcta
acggacgacgagttgcggaggagcagtcgcgtgaagataacgaatcctgttttgctcgat
agtttgctccaccctgtgcctgctggattatacgacgccgcttttggcccgctcgatgag
aagtctacttgtaagtcatgtggtcaaacttctaaaaattgcccgggtcatttcggtcat
attgagcttgtttcccctgtttacaaccctttgatgttcaatattcttagcaatatcata
caaagaacttgtttctcttgccatcattttcaggctagcagacaagaggtggatctgcgt
acgtcccaattggagctcataatgaagggggatattgttaaggcgaaaagtttggattct
attaatcaagatgaatccatacatccaggtgatggtgatgagagccactcttgtgctgag
caactgggagataattggacctcccttcaattcagcgaggcaatgtctgttttaaggaaa
tttctgcttaggaaatataggaagtgtcaaaattgtggagtcatcaatcctagaatcagc
aaaccaacctttggatggtttcatatgaatgttctctcagctgatcaagctagagcaaat
actgttagagctgtggcaagtgaaacagccaatgatgatatatctttaggtggtggggat
actacagatgaagaagatattacctctgctgagactgcaaaaagagataatagaaaaagc
aggaaattgtcttacaagcttgctgcacaaagtaaactttctgggtctttgttaccatcc
caggttaaagatattttggagcttttgtgggaaaacgaggctcgactctgttcttatata
agtgatattcaagatcaggggtttggaaagaaagctggtcactcaatgttctttctagag
aatatttttgtgccaccaatcaaattccgtcccccaactaaaggaggtgataatgtgatg
gaacatcctcaaactgttttgttgattaaggttttacaatgcaacatatccttaggagat
gcccacctaaataagtcagatccgtcaaaggttctaagccggtggatggatcttcagcaa
tctgtaaacgtgctatttgacaataaaactgcttctggccagagagatgtggctactgga
atttgtcaattgctggagaagaaggaaggcatctttcgccagaaaatgatgggaaagagg
gttaattttgcatgccgctctgtcatatcaccagatccttatttagcagtcaatgaaatt
gggattcccccatattttgcattaagattatcgtatcctgagagagtgactccttggaat
acagtcaagttaaggaatgctatccttaatggtcctgaatctcatcctggtgctactcac
tatgaagataaagtatcaacagtcaggcttccaccaaaagggaagttgctttctttgaca
gcaaggaaattaccatcctcaagaggggttattttgcaacatgggaagatagctgaccat
gaatttgaagggaaagttgtgtatcgtcacttgaaggatggtgacgttgtgcttgtcaat
cgacagccaacactccataaacctagcataatggcacatatagttcgcgttctaaagggg
gagaaaactgtacgcatgcactatgcaaactgtagtacttacaatgctgattttgatggt
gatgagattaatgttcattttccacaagatgaaatttctcgggctgaagcttacaatata
gtaaatgctaacaatcaatatgtgaaacctactagtggcgatccaatcagagctttgatt
caggatcatattgtaagtgctgctcttcttaccaaaaaggatacatttctaagttatgaa
gagttcaatcaactgctctacagttctggtgtatccatggctgggctaggttcattctat
ggaaaacatgggcagaaggttttcgtgtcaaattctgaaagtgaaatgtttctgtttcct
ccggcaatatggaggcctgaacccctatggactggaaaacaggttatcagtgcattgctc
tgctatatcaccagaggttcaccaccattcacagttgagaagaatacaaaaatcccccct
aattttttcaagactcaaatcagagagggaaaacgatacaatctagatacatcaagaaag
aaggatgagcctgatgaggataagttattgatatataaaaatgatttggttcggggtgta
gttgataaggctcaatttggtgactatggtataatacatacagtgcaagaactttatgga
tctaatgttgctggaaacctactttcagcattaagtcggttgttcactacctttttgcag
atgcatgggttcacatgtggagtagatgatcttatgataacagaaggaaaggatattgaa
agaatgaatcaactcaaaagttgtgaggaaattggtgacattgttcatcgagaatttact
ggagtgatggataatgataatatagatccaatcacgttgcagttgaatattgagaaaaaa
atacgctgtaatggagaagcagccttaacatacttggataggaagatgataagcaatctt
aactcaagaacaagctcaggggtattaaaggagctactatctgaaggaatattgaaacct
tcgggaaaaaattggatttctcttatgactacatctggagctaagggtagtatggtgaat
tttcagcagatatcttctcatttaggccagcaagagttggaaggaaaacgagttccacgc
atggtttctggaaagaccttaccatgcttttctccctgggattgttcccccagagcagga
ggattcattattgatcggtttcttacagcccttcacccacaggaatattactttcattgc
atggctggtcgtgaaggattggttgatactgctgtcaaaacatctcggagtggttacctg
caaagatgcttaatgaagagccttgagtgtcttaaagtttgttacgatcatactgtccgt
gatgctgatggttctattattcagttccactatggagaagatggtgttgatgtccatcaa
actagctttatcaccaaatttgaagcattatcaactaataaagaattgttctatagcaac
tgttgccgtcagatagacagatccagtccatatatcaacaaattgcctgatgctcttaaa
gcaaaagctgaaaatttcattcgtgatctgtcttcaaaagggaaaaatcttggttctatg
aagcgaagagaattcttaaagttgatggagcataagtatgtctcatgtctcgctcaacca
ggtgaaccagttggtgtattagcttctcaatctgttggagagccagcaacgcagatgact
ttgaatactttccaccttgctggtcgaggtgaaatgaatgtgacccttggaattccacgt
ttgcaagaaatcgtgatggctgctgcacgtgatatcaaaactccatttatgacatgcccc
ttgagacccaataaatctatggaagatgccatttgtcttgccgataagttgaagaagatc
actgtagctgacataattaagagtatgaaagtttctgttataccagtaaccgttcttggt
ggtcaggtttgcagtatatataaacttgtcatgaagctatataaacctaaacagtatccg
aagtacactgatattacccttgaagactgggaggatactctaagagttgtctttgcgaga
gagttggaggatgccattgaaaatcacatgacattgctttctaaaattagtggcataaag
aaattcaagacaccacaatcacatcattcaaacagctcagaaagtgctcacagcaatgaa
tcagaatttgagaaaaaaggtcaaattaatgatgatgatgatggtgttgttgaagatacc
gaagggtatgaagatcttggttcagatgcacaaaagagaaaacagcaaggtactgatgag
gttgattatgaggatggtcccgaagaggaaacacgtgatggtgagctatcagaggaaatt
gatggtgatgaggaaggcagtgatactgatgtcaatgagaatgataataatgtcacactt
gatgctaataattctgaaggactacaaaaaccctccaagtcaaagtctattggtgaaaaa
gataacaaacagaagagaaaatctgaaccagcttcaaaaaaatatgatagggcagttttt
gtgaaagctaaagggatgcattttgagatccactttaaatttactggagaacctgacatt
ttgttaactcagattgctcagagaacagccaagaaggtttgcatccaaaattttggaaaa
gttggtgaatgtaaagctattacttgtaaagaaagtggagttgtctactatggtgaagat
ggcagaaaaagagatgatattccagcctcagttaaagaaaaaataccagcacttcagaca
tcaggggtacattttaaaacattttgggagttggaagatagtcttgatgttaggtacatt
tattcaaacaacgtgtatgctatgctaaacgcatatggggtggaagccgcgagggagacc
atcatcagggaaatacagaatgttttcaagtcttatggtatatctgtaaatatccggcac
ttgacactcattgccgacttcatgatgcactccggtgactatcgcccgatgaacagaaca
gggagcatagcagactctacttctcctttcatcaaaatgtgctttgagacagcttccaaa
ttcattgttgaagcagcttatcatgggcaggtggacaacttggaaacaccatcttctaga
atttgtcttggtttgccagtgaagatgggaactgggtgccatgacttgatacagaaattg
gagatttga
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integrated database retrieval system
