Cajanus cajan (pigeon pea): 109794072
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Entry
109794072 CDS
T04868
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109794072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109794072
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109794072
mRNA degradation factors
5'-3' decay
Decapping complex
109794072
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
109794072
NCBI-ProteinID:
XP_029126308
LinkDB
All DBs
Position
Unknown
AA seq
550 aa
AA seq
DB search
MQNPWVNQSGLYSGDYPNLLSNMLQQQLNHHSGSLSPHLLTQLQQQQHRLHHPIQQSRGY
MFQSHLLSPQVSSGSSIVSKYEHMLGLADVGEHRPKSTHKGKQSHRFSQHGSDASSLKNG
SGSLKFRSKYMTSDEIESILRMQLAVTHCNDPYDDDYYHQACLAKKSGAKLKHSFCPIQI
KELPPSARANTESHGFLQVDALGRVSFLAIRRPHALLEVDLSNSSISGSTERNISEKPLE
QEPLFAARVTIEDGLCLLLDVEDIDRFQQCNQLQDGGAQLRRRRKVLLEGLATSLQLVDP
LGKNGHNVGLGAKDDVVFLRLVSIPKGRKLLAKYLQLLVPGSELMRLVCMAIFRHLRFLF
GVLPSDLAAAETTSDLSKVVCQCVQGMDFGALGACLAAVVCSSEQPPLRPLGSTVGDCAS
RILVSVLERAAELLADPHGACSYIGNRSFWQASFDEFFGLLTMYCMNKYQSIMPSLLIQG
KPNVAVIGSDAAKAISKEMPVELLRASLPHTNDQQRKLLLDFAQRSVPVIVFNSYTGSSG
GHVNSETVLS
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatccctgggtcaatcaatcagggttgtattctggggattatccaaacctcctc
agtaatatgttgcagcaacaattaaaccatcatagtggatcattatcacctcatttattg
acccaattgcagcagcaacagcatagactgcatcatcccattcagcaatccagaggctac
atgttccaatcccatttacttagtcctcaggtttcttctggatcatccatagttagcaaa
tatgaacatatgcttggtcttgctgatgttggagaacacagaccaaaatcaacgcataag
ggtaaacagagtcatcgtttctcacaacatggatctgatgccagtagcctgaagaatgga
agtggctcattaaagtttaggtccaagtatatgaccagtgatgaaatagagagtattctt
agaatgcagctggctgtgactcattgtaatgatccctacgatgatgactattatcaccaa
gcttgtcttgctaagaaatctggggctaagttgaaacattcattttgcccaatacaaata
aaggaacttcctccaagtgctcgtgccaatactgagtcccatggttttcttcaggtcgat
gctttagggagggtttcattcttggctattcgccggcctcacgctcttcttgaagttgat
ctgtcaaattcttctattagtggtagcactgagcgaaatatttcagagaaaccccttgaa
caggagcctctgtttgcagccagagtcacaattgaggatggtctatgtcttcttcttgat
gtagaggatattgatcgttttcagcaatgtaatcagcttcaagatggtggagctcaatta
agacgaagacggaaggttcttttggaaggactagcaacatcactccaacttgttgaccca
ctgggaaagaatggacacaatgttgggctcggtgctaaggatgatgttgttttcttacga
ttagtatctatacccaaagggcgtaaactcctagctaagtatcttcagttacttgttcct
ggtagtgagcttatgcgtctagtctgcatggccatttttcgtcatttgagattcttattt
ggtgttctcccctctgatctggctgctgcagagactacaagcgacctttctaaggttgtt
tgtcagtgtgtccaaggaatggattttggtgccctaggtgcttgtcttgcagcagtggtt
tgttcctcagagcagcctcctctacgtcctcttggaagcactgttggagattgtgcctcc
cgtattttagtatctgttcttgagagggccgctgaacttcttgctgatccccatggtgct
tgcagctatataggtaataggtcgttttggcaggcctcatttgatgaattttttggcctt
ctcacaatgtattgcatgaataaataccaaagtatcatgccatcactgctcatacaaggt
aaaccaaatgtggctgtaattggatcagatgctgctaaagcaattagcaaggaaatgcct
gttgaactcttacgagcaagtcttcctcacaccaatgatcagcagaggaaattattacta
gattttgctcagcgctctgtgcctgtaattgtatttaacagctatacagggagcagtggt
ggtcatgtgaactcagagactgtgctaagttga
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integrated database retrieval system
