Cajanus cajan (pigeon pea): 109795564
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Entry
109795564 CDS
T04868
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109795564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccaj03041
]
109795564
Spliceosome [BR:
ccaj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
109795564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
PRP4
ANAPC4_WD40
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_SCAP
eIF2A
Beta-prop_Nup120_160
WD40_like
Motif
Other DBs
NCBI-GeneID:
109795564
NCBI-ProteinID:
XP_020210694
LinkDB
All DBs
Position
2:complement(17608930..17615662)
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AA seq
572 aa
AA seq
DB search
MEVEKENTTSTITEEPSIPASDGQDLVSSVNTSLPHSIQPVIPPVIAPSVVPPLAPIPAI
PPPRPLAPLPVRPPVIRPPVPQNGEVGSSDSDSDNDDSNTRINKGPGEYEISEESRLVRE
RQEKAMQELMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLD
AEGQLEKLMKAHEDEEAAASAPKDEAEEELQYPFYTEGSKALLDARIYIAKYSLARAALR
IQRAQRRRDDPDEDMDAEMDWALKQAGNLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLT
GASKLWSMPKIKKHSTIKGHTERATDVAYSPTHDHLATASADRTAKYWNDQGSLLKTFEG
HLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGDELLLQEGHSRSVYGLAFHRDGSLAA
SCGLDALARVWDLRTGRSILALEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKKKS
FYTIPAHANLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVL
ADGGYIVTASHDRTIKLWSSNTTNEQQAMDVD
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggaagtggagaaggaaaataccacatcgactattactgaagaaccttcaatacctgcc
tctgatggtcaagaccttgtttcttccgttaatacatctctaccccattccatacaacct
gttattccaccagttattgcaccttctgttgtacctcctttagctccaattcctgcaatt
cctccccctcgcccgctggcaccgcttccggttcggccaccagtcattaggccacctgtg
ccacaaaatggcgaggttggatcaagtgattctgattcagacaatgatgactcaaatacg
agaattaacaaagggcctggggaatatgagatatccgaagagagtagactggttagagag
cggcaggaaaaggcaatgcaggaactcatgatgaagaggcgtgctgctgctcttgctgtt
cctacaaatgatatggctgtgcgagctcggcttcgccatcttggggagccaataactctg
tttggtgagagggagatggagagacgggacaggttgcgaatgattatggcgaagctggat
gcagaaggtcagctggagaagctgatgaaagctcatgaggatgaagaggctgcagcttct
gctccaaaagacgaggccgaggaagaactgcagtatcctttttacactgaagggtcaaag
gctctcctggatgccagaatttatattgctaaatattctttggcaagggcagcattacgg
attcaacgtgcacagagaagaagggatgatccagatgaagatatggatgcagagatggat
tgggcattgaagcaggctgggaatttgagtcttgaattcagtgaaattggagatgatcgg
ccgctttctggttgctccttctcgagggatggaaaatggcttgctacctgttctttgacc
ggagcttccaagttgtggagcatgcccaaaataaaaaaacattccaccattaaggggcac
acagagcgtgctactgatgttgcttattctcctactcacgatcatttagcaactgcctct
gctgatcgaacagcaaagtattggaatgatcaaggatctcttttgaagacatttgaaggt
catctagaccgtcttgctcgcattgccttccatccatcagggaagtacctgggcactgct
agctttgacaagacatggagattatgggacatagaaacaggagacgagttgcttcttcaa
gaaggccatagtagaagtgtatatggtttggcttttcaccgtgatggatcattagctgca
tcttgtggactagacgctctggctcgtgtttgggacctccgaactggaagaagtatactt
gcactggaaggtcatgtcaagccggttctcggcgtcagtttttcacctaacggatatcat
ctagctacgggtggtgaagacaacacttgtcggatttgggatttgaggaagaagaaatcc
ttttatactattcctgctcacgctaatttaatatcacaagttaaatttgagccacaagaa
ggttactttttagtaactgcctcatatgacatgactgctaaggtttggtcaggccgtgac
tttaagcctgtgaagacactatctgggcatgaagcaaaagttacttctgtggatgttctt
gcagatggcgggtatatcgttactgcctcccatgatcgcaccataaaactgtggtccagc
aatacgacaaatgaacaacaagctatggatgttgactag
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