Cajanus cajan (pigeon pea): 109796487
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Entry
109796487 CDS
T04868
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
ccaj
Cajanus cajan (pigeon pea)
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccaj03009
]
109796487
Ribosome biogenesis [BR:
ccaj03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
109796487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EML
WDR55
EIF3I
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_IP5PC_F
Beta-prop_Vps41
Beta-prop_WDR19_1st
WDR54
Beta-prop_SCAP
Beta-prop_BBS7
Beta-prop_IFT122_1st
Beta-prop_VPS8
Beta-prop_WDR75_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
PEP5_VPS11_N
Beta-prop_LRRK2
Nucleoporin_N
Beta-prop_DCAF12
WD40_RFWD3
GCN5L1
Beta-prop_WDR19_2nd
LZ3wCH
Motif
Other DBs
NCBI-GeneID:
109796487
NCBI-ProteinID:
XP_020211750
LinkDB
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Position
1:9521014..9525059
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AA seq
449 aa
AA seq
DB search
MEVVLASSSVDGGIGCWDLHTGAEQLRYKSCSSPSHGLVAVGPRFIASSQIREPPAAPGS
VLFWSWSKPQVEVKSFPAETVKPLAANHPGTFIAGGASSGDIYLWEVETGRLLKRWRAHF
RAVTCLVFSEDDSLLVSGAEDGCVRVWSLFMIFDDLRSQQANNLYEYSFSEHTLSVTDVV
IGNGGCNAIIVSASEDRTCKVWSLSRGTLLRNVVFPSVIDSIALDPAEHVFYAGSRDGKI
FIAALNTESIATNNYGTHILGSFSNHSKSVTCLAYGTGENLLISGSEDGIIRVWNASTRN
IVRMFKHAKGPVNNILVVRRENDYSNHTSSNVQASSRKQGSNLPPPLEKYVNSIDEDSNM
KTIISLGGGRRPVDASYLSSHVITNYIKELQHQGSAATSEMEMEKLKHDYQRSMQMANQW
KKMYENLHQFCVKELLDVGQARTLDENDN
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggaggttgttttggcgtcgtcctccgttgacggcggaatagggtgttgggacctccac
accggcgcggagcagctccgctacaagtcctgctcctccccttctcacggcctcgtggcc
gtcggtccccgcttcatcgcttcctctcagattcgagaacctcccgcagcgcctggttcc
gttctcttctggtcctggtccaagcctcaagttgaagtgaagagttttcccgctgaaacc
gttaaaccccttgctgctaatcacccgggaaccttcatagctggtggagcttcctctggt
gatatttacttgtgggaggttgaaaccggtaggttgcttaagaggtggcgtgctcatttt
agggcagttacttgcctggtgttttcggaagatgattcactgttggtatctggtgctgaa
gatggatgcgtaagagtttggtctctcttcatgatatttgatgatttgagaagtcagcaa
gcgaataacctatatgagtatagtttttcagagcacactctgtctgtaactgatgttgtt
attggtaatggagggtgcaatgcgattattgtgtcggcttcagaggatcggacttgtaag
gtatggagcttatctaggggaacactactaagaaatgtagtattcccttcagtaattgat
tcaattgcattggatccagctgaacatgtcttttatgctggcagcagagatggaaagata
tttattgctgcacttaacactgaaagtattgctactaataattatgggacgcatatcctt
ggttctttttctaaccacagcaagtcagttacatgcttagcatacggaacgggcgagaat
ttgttaatatctgggtcagaggatggaatcattcgtgtttggaatgcaagcactcgtaac
attgtccgcatgtttaaacatgctaaaggacctgtaaataatattctcgttgttagacga
gaaaatgactatagtaatcacacatcttctaatgtacaagcatcatcaagaaagcagggg
tctaatttaccccctccattggaaaaatatgtaaattcaatagatgaagactcgaatatg
aagactattatcagccttgggggtggcaggagacccgtggatgcttcatatctcagttct
catgtgataactaattacattaaggaacttcagcatcaaggttcagctgctacttctgaa
atggagatggagaaactaaaacatgattaccaaaggtcaatgcaaatggccaaccaatgg
aagaaaatgtatgaaaacttgcatcaattttgtgtaaaggagctattggatgttggtcaa
gctagaaccttggatgaaaatgacaattaa
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