Cajanus cajan (pigeon pea): 109796581
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Entry
109796581 CDS
T04868
Name
(RefSeq) structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
ccaj
Cajanus cajan (pigeon pea)
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccaj03036
]
109796581
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ccaj00535
]
109796581
Chromosome and associated proteins [BR:
ccaj03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
109796581
Meiosis-specific proteins
Cohesin complex and associated proteins
109796581
Proteoglycans [BR:
ccaj00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
109796581
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
ATG14
AAA_23
APG6_N
Microp_apicomplexa_7
Milton
Motif
Other DBs
NCBI-GeneID:
109796581
NCBI-ProteinID:
XP_020211840
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All DBs
Position
3:20174304..20198590
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AA seq
1201 aa
AA seq
DB search
MYIKQVVIEGFKSYREQIATEPFSSKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSDD
RHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTE
VMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQ
ETGNKRKQIIQVVQYLDERLKELDEEKEELRKYQQLDKQRKSYEYAIYSKEVQDAQQKLT
EIEDARAKVSETSAKKYNDVVDAHEKSKDLENTLKDVTKELQNFNKEKEVIEKRRRVALQ
KHTELELDVKDLQEKISGNIRAKEDAAKQLEILEKEIQDSTVELGKIIPLHEDQVQKEKD
IAKRIMEREKKLSILYQKQGRATQFSSKAARDKWLQKEIDDLERVLSSNKGQEQKLLDEI
DRLNEELRDCDENINRRKSDITALETLIAQSREGLNHYKVERDKLHDERKSLWGKENELT
SEIDKLRAEVEKAEKSLDHAIPGDVRRGLNSVRKICREYNISGVHGPIIELLNCDEKFFT
AVEVTAGNSLFHVVVENDDKSTQIIRHLNSQKGGRVTFIPLNRVKSPRITYPQSSDVIPL
LKKLNFRHDYTPAFSQVFARTVICKNLDVASRVARTDGLDCITMDGDQVSKKGSMTGGFY
DHRRSRLKFMNIIKLNADTIHTREEELEKVRIDLQDIDRRINELVAEQQKIDAKRAHDKS
EMEQFKQDIANANKQKQLISKALAKKEKSVVDVQNQIEQLKASITMKKAEMGTELIDHLT
PEEKKLLSDLNPEIKDLKEKLVACKTDRIETEARKAELDTNLTTNLRRRKQELEAVISSV
DDDSLVADAELKQQELSDSKISVDDATGQLRRVTESINDRTRQIKKIKDELNKLKSLEDE
YDRKLQEEAKELEQLLSKKNIFAAKEEEYAKKIRELGPLTSDAFEAYKRRNIKELHKMLH
RCNEQLQQFSHVNKKALDQYINFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIE
RTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDDDEDEDGPREANPEGRVEKYIGVKVK
VSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNM
IRRLADIANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVVSKEDALEFIEHDQTHNA
E
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgtacatcaagcaggttgtgattgaaggtttcaagagttaccgagagcaaattgccaca
gagcctttcagttctaaagttaattgtgttgtcggtgctaatggatctggaaagacaaac
tttttccatgcgatccgttttgtattaagtgatctctttcaaaacctacgcagtgatgat
aggcatgcactactccatgaaggagctggacatcaggttttatctgcgtttgtggagatt
gtgtttgataattcagacaatcgtatcccggttgacaaggaggaagtgcgcttgcgccgg
actattggtttgaaaaaggatgagtattttctagatggaaaacacataacaaaaactgaa
gtgatgaatttactggagagtgctgggttctctcgatcaaatccttattatgttgtacaa
caaggaaagatagcatcactaaccttgatgaaagactctgaacgactggatttgctgaaa
gaaataggtggtaccagagtttatgaggagagacgtcgtgaaagtttgaaaataatgcag
gaaacaggtaataaaagaaagcaaataatccaagttgtacagtatttagatgaaaggttg
aaggaactagatgaggagaaggaagaacttagaaaatatcagcagcttgacaagcagagg
aaatcctatgaatatgctatttatagcaaagaagttcaagatgcccagcaaaagctgaca
gagatagaagatgctcgagccaaggtttctgaaacatcagcaaagaagtataatgatgtt
gttgatgcacatgaaaaatccaaagatttagagaatacattgaaagatgtaacgaaagag
cttcaaaactttaacaaagagaaagaagtcattgaaaaacgacgaagagtggcactacag
aagcacacagagcttgagcttgatgtcaaagacctgcaagagaagatctctggaaatatc
cgagccaaagaagatgctgcaaaacaacttgagatacttgagaaagaaattcaagattca
acagttgaactgggcaaaatcattcctttacatgaagatcaagttcaaaaagaaaaagac
attgccaagcgaataatggagcgcgagaagaaactcagtatactttatcaaaaacaagga
cgagcaacccagttttcaagtaaagctgctcgtgataagtggcttcaaaaggagattgat
gatcttgaacgggtgctttcttcaaacaagggacaggagcaaaagcttttggatgaaatt
gatcggcttaatgaagaactacgtgattgtgatgagaacataaatagacgaaaatcagat
attactgctttggaaactctcattgctcagtcacgtgaagggcttaatcattataaagta
gagagagacaagttacatgacgagaggaagtccctatggggcaaagagaatgaacttact
tctgaaattgataagctgagagcagaagttgagaaggctgaaaagagtcttgatcatgca
attcctggtgatgtgagaagagggttgaattcagttaggaagatctgcagggagtataac
atttctggagttcatggtccaattatcgagttactgaattgtgatgaaaaatttttcact
gctgttgaagttacagcaggaaacagcttatttcatgtggtggttgaaaatgatgacaag
tcaacccaaataattagacatcttaattcacaaaaaggtggccgagttacatttattcca
cttaacagagttaagtctcctcgcatcacttatccacagagttctgatgtcatacctctt
ctaaagaaattgaattttaggcatgactacactcccgcattcagtcaggtctttgctaga
acggttatctgtaagaatttggatgtggcttcaagggttgctcgaactgatggtctggac
tgcataacaatggatggtgatcaagtaagcaagaaaggtagtatgactggaggattttat
gatcacaggcgatcaagattgaagtttatgaatatcatcaagctgaatgcagacactatt
cacactagagaggaggaattggagaaagttagaattgatctacaagatatagaccgaagg
attaatgaacttgttgctgagcagcagaagattgatgccaagcgtgctcatgacaaatca
gagatggaacagtttaagcaggatattgctaatgctaataagcagaagcagttgatatct
aaagcacttgcaaagaaggagaagtcggttgtcgatgtccagaatcagattgaacagctc
aaggctagtatcacaatgaaaaaggctgagatgggcactgagctcattgatcatttaaca
ccagaggaaaaaaagcttttgtcagatctgaaccctgaaatcaaagaccttaaagagaag
cttgttgcttgcaagactgatcgcattgagacagaagcacggaaagcagagctggatacc
aatctgactactaaccttaggagaaggaaacaagagttggaggctgtaatatcatctgtg
gatgatgactctttggttgctgatgctgaattgaagcagcaggaacttagtgattctaaa
atatcggttgatgatgcaacagggcagcttagaagagttactgaaagtataaatgaccga
acaaggcaaattaaaaagataaaagatgaattgaataaattgaagtccttggaggatgag
tatgataggaaacttcaggaagaagctaaagaattagagcaattgctgagtaaaaagaat
atatttgctgctaaagaagaggaatatgccaaaaaaataagggaattgggcccattgaca
tcagatgcttttgaagcgtataaacggaggaatattaaagagttgcacaaaatgctgcac
aggtgcaatgagcaattgcagcagtttagtcatgtaaacaagaaagcacttgaccagtat
ataaattttacagaacaacgagaagaacttcagaaaagacaggctgaacttgatgcagga
gatgagaaaattagggagctgatatcagtgctagatcaacggaaggatgaatcaatagaa
cgtactttcaaaggtgttgctaggcattttcgggaagtattttccgaacttgtacagggg
ggtcatggtcatctggttatgatgaagaagaaggatggtgatgatgatgaagatgaggat
ggtcctcgtgaagcaaatccagaggggagagtagaaaagtatattggagtgaaagtgaag
gtctcttttacaggacaaggggagacacagtccatgaagcagttgtctgggggtcaaaaa
actgttgttgcccttacacttatctttgccatacagcgatgtgatcctgctcccttttat
ctatttgatgagatcgatgcagcgctggatccacagtacagaactgctgtcggaaatatg
atccgtcgcctggccgacatagcaaacactcaatttatcacaacaacattccgcccagag
ctagtgaaagttgctgacaagatatatggagtgacacataaaaacagggtcagccgtgtt
aatgttgtatccaaagaagatgcactagaatttattgagcatgaccagacgcacaatgct
gaataa
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