Cajanus cajan (pigeon pea): 109796603
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Entry
109796603 CDS
T04868
Name
(RefSeq) uncharacterized protein LOC109796603 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109796603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaj03021
]
109796603
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109796603
Transcription machinery [BR:
ccaj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109796603
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109796603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
109796603
NCBI-ProteinID:
XP_020211887
LinkDB
All DBs
Position
3:complement(19054137..19060613)
Genome browser
AA seq
1014 aa
AA seq
DB search
MESTRRSLDRSREPGPKKPRLIDELGARQLPQRQQGSGAVATLASVRFRTNDRDSESSDS
GRGGGYQPQPPPHQELVAQYRTALDELTFNSKPIITNLTIIAGENQSAAKSIAATVCANI
LEVPSDQKLPSLYLLDSIVKNIGQDYIKYFAARLPEVFCKAYRQVDPSVHSSMKHLFGTW
KGVFPPQCLQMIEKELGFAPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQS
SRSKGGVNDMTGAILNSNEDSERPDRALGASRPWLDPRINMQNNQHIHRDAFNDSVPEKN
FGGSYGGSEYSSGISSNLVSVAGRTASRLVDLGHDKTWFKTGGDDAEIISGQRNGISLKR
SFSNHDAPKSMNLDPHRQPRPNLMPGNWKNSEEEEFTWDEMNSGLIDHGPNVSSNLSRDS
WMAEDENLEGEDHHQITRHFKKQIPGFGGHPPSSWQLQKHHPVDKLNLKPGYSEAFVSTL
GGLPANASSLAVKKVNQSFMPNAVVGMAKIAGQQSDSGETESPSGQSPLRQQSPSLPGTV
HHPHSMQNLVEQEMPQNLKTTQFLGGPRSQHIRDPSPTHRPIVQVSNLRRSQEKDMQGPL
SSVTSFRPKLQQQKLDPSQTVTAKTKLPQSKISLARETSEQLTPINLPAAAIKSGINPKK
SITSNLDPRNLPSQSGVQPTRAGRSSTTLISSGSAVASPSSLDPRHNDSSTLPKKPQVKA
GQPPRRLSTQPPASSNVSSSSALSLNATNNLNPITNLLSSLVAKGLISAETESPNMVPSE
VPMGSKDQTENITTSCSSPVTTVSGSVAVPVSSSRDEVDSASKTSLLLPQSTSTEIRNLI
GFDFRPNVIRDFHPPVISELLDDFPHHCQVCGIRLKLEEQFNRHLEWHATREHGLTNASR
SWYPKSSDWIAGKAEYSSDLEFTDSVDVHDQKTDSSQLDTMIVADENQCLCVLCGELFED
VYCQERNEWMFKGAVYMNYTDINSEMESINVGPIIHAKCLSENSIAANLVGPNI
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggagagcacgcgcagatccttggatagatccagagaaccgggtcccaagaagccacga
ttgatcgacgaactcggcgcacgacagttacctcaacgacaacaagggtctggggcagtt
gctacgttggcatctgtgaggtttcgaacgaatgacagagactccgaaagcagcgattct
ggtcgtggtggcgggtaccagcctcagcctccgccgcaccaagagcttgttgctcagtac
aggaccgcccttgatgagctcactttcaattcgaagcccataattaccaatttgactatt
attgctggagagaaccaatctgctgccaagtcaattgctgccacggtttgtgctaacatt
ctagaggttccaagtgatcaaaaactgccatctctttatctcttggacagtattgttaag
aacatcgggcaggattatataaaatattttgctgccagactgcctgaggtattctgcaag
gcatacagacaggttgatccttcggtacattcaagtatgaaacatttatttggaacttgg
aaaggagtctttcctcctcagtgccttcagatgattgagaaggaacttggctttgcacct
gcggtcaatggctcagcttcagtttctgctacagtcaggagtgatttgcagtcacaacgg
ccacctcatagtatccatgtgaatcccaaatatttagaaaggcagcgtcttcagcaatca
agtaggagtaaaggaggagttaatgatatgactggagctattttaaattcaaatgaggat
tcagagaggccagatagggctttgggtgcttcacgtccgtggctggatcctaggattaac
atgcagaataatcagcacattcatagagatgcatttaatgattctgttcctgaaaagaac
tttggtggatcatatgggggcagtgaatacagttctggcatttcaagtaatttggtttca
gtggctggaagaactgcaagtaggcttgttgatttaggacatgacaaaacatggttcaaa
acaggtggtgatgatgcagagatcatatctgggcaaagaaatggtatcagtctgaagcgt
agtttttcaaatcatgatgcaccaaagtccatgaatttggatccacatcgtcagccaaga
ccaaacttaatgccaggtaattggaaaaattctgaagaggaggagttcacgtgggatgag
atgaactctggtttgattgatcatggtcccaatgtctcaagcaatttgagcagagactca
tggatggccgaagatgaaaatttggaaggtgaagaccaccaccaaatcactcgccatttt
aagaaacaaatacctggttttgggggccatccaccatcatcatggcaattgcagaagcac
cacccagttgataagctgaatctgaagccaggttattcagaagcatttgtgtctactctt
ggtggtttaccagccaacgcaagttcgttggctgtcaagaaggtgaaccagtcttttatg
ccgaatgcagtagtaggaatggccaaaattgcaggacaacaatctgattctggggaaact
gaatccccttctggccagtcacctttgcgacaacagtctccatcattgccaggaacagta
caccaccctcattcaatgcaaaatttggttgagcaagaaatgccgcagaatctcaaaaca
actcaatttttgggaggtccgagaagtcaacatattagagatccctctcctacccatcgg
cccattgttcaggttagtaacttgcgaagatcacaggaaaaggacatgcagggcccatta
tcttctgtaacatctttccgaccaaagcttcagcaacagaagctggacccttctcagact
gttactgctaaaactaagctgccccaatctaaaatttctttagccagagaaacatcagaa
cagttgaccccaattaatttgccagctgcagctatcaagagtggaatcaaccccaaaaaa
tcaattaccagtaatctggatccaaggaatcttccatctcagtctggggttcagcctact
cgggctggtaggtcttctaccacgctaatttcttcagggtctgcagttgcatcaccatct
tcattagatcctcggcataatgattcatccacactgccaaaaaaacctcaagtaaaggct
ggacaaccaccacgaaggctttctactcaaccacccgcttcctctaatgtgagcagttcc
tcagccctgagcttaaatgctaccaataacttaaatccgattacaaaccttttaagctca
ttggttgcaaagggtttgatatctgcagaaacagaatcgccaaatatggtaccaagtgag
gtgccgatgggatccaaagatcaaactgaaaacattaccactagttgctcttcaccagtt
acaacagtttctggttctgtagctgtcccagtatcatcttccagagatgaggtagactct
gcttcaaagacctctcttttgttacctcaatcaactagcacggaaatcagaaatctcatt
ggctttgattttagacccaatgtaattcgagatttccatccacctgtaattagcgaatta
ttggatgatttccctcatcattgccaagtttgcggtattaggcttaaactagaagaacag
tttaatagacacttggagtggcatgccacaagagaacatggtctaactaatgcttcaaga
agttggtacccaaagtcaagtgattggattgctggcaaggcagaatattcatccgatctt
gaatttaccgactctgttgatgtgcatgaccaaaaaacagacagcagtcaactggatacg
atgattgtagcagatgaaaaccagtgcttgtgtgtattgtgtggcgagctatttgaagat
gtctactgtcaggaaaggaacgagtggatgttcaaaggggccgtttacatgaactacaca
gatatcaatagtgagatggaaagtataaatgtgggtcccatcattcatgccaaatgctta
tcagagaactcaattgccgccaatttggtagggcctaatatctga
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