Cajanus cajan (pigeon pea): 109796660
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Entry
109796660 CDS
T04868
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109796660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccaj03041
]
109796660
03009 Ribosome biogenesis [BR:
ccaj03009
]
109796660
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109796660
Spliceosome [BR:
ccaj03041
]
Complex A
U1 snRNP components
U1 related factors
109796660
Complex B
109796660
Ribosome biogenesis [BR:
ccaj03009
]
Eukaryotic type
Pre-60S particles
Helicases
109796660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
109796660
NCBI-ProteinID:
XP_020211991
LinkDB
All DBs
Position
3:11836478..11840719
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AA seq
612 aa
AA seq
DB search
MNPYDNRYSDAASFRGRRSDFAGSIPPPSFVSRGGAVPYGAPYGVARPNGFGSAPVTPVP
PFVPPPGGFSVGRGGGRVGNGHVSDRKYDVGRGGGRGRGGGGGGGSSRAGAHGFRGSGRG
GRHGGGSSRDELNNIALPKQDFRNLVPFEKNFYVECHAVRAMSDQEVMHYRASREITVQG
QDVPKPVRMFHEANFPDYCLEVIAKLGFAEPTPIQAQGWPMALKGRDLIGIAETGSGKTL
AYLLPALVHVNAQPRLAQGDGPIVLVLAPTRELAVQIQEEALKFGSRANIRSTCVYGGAP
KGPQIRELRRGVEIVIATPGRLIDMLEAQHTNLHRVTYLVLDEADRMLDMGFEPQIRKII
GQIRPDRQTLLWSATWPREVETLARQFLRNPYKVVIGSPDLKANHSINQIVEVITDMEKY
NRLIRLLKEVMDGSRILIFMETKRGCDQVTRQMRMDGWPALSIHGDKNQSERDWVLAEFK
SGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHA
NAKFARDLIKILQDAGQVVSPALSALVRSAGSGQFGSGGGFRSRGRGGYGNRGLTSGSNA
IPLGSKRPWQCL
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaacccctacgacaatagatactccgacgccgcttctttccgcggccgtcgcagtgat
ttcgctggatctattccgccgccgtctttcgtcagccgcggcggcgcggttccctatgga
gcaccgtacggcgtcgctagacccaacggtttcggatccgcacccgttaccccggttcca
ccctttgtgcctcctcctgggggctttagtgtaggccgaggcggtggtagagtgggcaat
ggtcacgtgagtgatagaaaatatgacgtaggtcgtggcggtggaagaggccgcggtggt
ggtggtggtggtggtagcagcagagccggagctcacggttttaggggctccggaagagga
ggtagacatggtggtggatcttctagggacgagttgaacaacattgcactcccgaagcag
gatttcaggaatttagtcccttttgagaagaacttctacgttgagtgccatgcggtgagg
gccatgtctgatcaagaagttatgcattaccgagccagtagagagatcaccgtgcaaggg
caggatgtgccgaagcctgtacgcatgtttcatgaggccaattttcctgattactgcctt
gaggtcattgccaaactgggatttgctgagcccactccaattcaggctcagggttggccc
atggctctgaagggtagagatttaattggcattgctgagactggctcgggtaaaactttg
gcgtatttgcttcctgctttagtgcacgtcaatgcacaacctcgattggcacaaggggat
ggtcccattgtcttagttttagcaccaactagagagttagctgttcaaatccaagaagag
gctcttaaatttgggtctcgtgcaaatattagaagtacatgtgtttatggtggtgcacca
aagggtccccaaattcgcgagcttagaagaggtgttgagattgttattgctacacctggc
cgtctaatagatatgttggaagctcagcacacaaacctccatagagtgacttaccttgtg
ttggatgaagctgatcgaatgctggacatgggttttgaacctcaaatacggaaaattata
ggccagattcgaccagataggcaaacattattatggagtgctacatggccaagggaggtt
gaaactcttgcaaggcagtttctgcgcaacccatacaaggtagttattggatcgccagac
ctgaaggcaaatcattctataaatcaaattgttgaagttataacagacatggagaaatac
aatagattaatcagattgctgaaagaagtgatggatgggagccgaattcttatatttatg
gagacaaagaggggatgtgatcaagttacgagacaaatgagaatggatggatggccagca
ttgtccatccatggtgataaaaaccagtctgaaagggattgggtcttggctgaatttaag
agtggcagaagtccaataatgactgccactgatgttgctgcacggggtcttgatgtgaaa
gacataaaatgtgtgatcaattatgattttccatcaagcctggaagattatgtccacaga
attggtcgaactggtcgtgctggggctaaaggaactgcatacaccttttttacacatgcc
aatgccaaatttgctagggatctgattaagattttacaagatgctggtcaggttgtgagt
cctgcactgtctgcattggttcggtcagctggttcaggtcaatttggatcagggggaggt
ttccgctctagaggacgaggaggctatgggaatcgaggtttaacatcaggttccaatgcc
attcctctaggttcgaagaggccttggcagtgtctatag
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