Cajanus cajan (pigeon pea): 109796801
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Entry
109796801 CDS
T04868
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109796801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaj03021
]
109796801
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109796801
Transcription machinery [BR:
ccaj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109796801
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109796801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
GD_AH_C
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
109796801
NCBI-ProteinID:
XP_020212195
LinkDB
All DBs
Position
3:complement(19063810..19070131)
Genome browser
AA seq
1036 aa
AA seq
DB search
MESTRRSLDRSREPGPKKPRLIDELSSRQLPQRQQGSGAVATLASARFRTNDRDSENSDL
GRGGGVGGYHPQPPPHQELVAQYRTALAELTFNSKPIITNLTIIAGENQSAAKAIAAIVC
ANILEVPSDQKLPSLYLLDSIVKNIGWDYIKYFAARLPEVFCKAYRQVDPSVHSSMRHLF
GTWKGVFPPQSLQMIEKELGFAPAVNGSASVSATTVRSDLQSQRPPHSIHVNPKYLERQR
LQQSSGSKGVNDMTGAILSSNEDSERPDRALGPSRPWLDPRINMQNNQHTHRDGFSDSVL
GKTIGGSCGGSEYSSGISSNLISGAGRTGSRLVDLGNEKPWFKTGDDVETISGQGNGIGL
KRSFSNHEAPKSINLDAHRQPRQDITNIQSNVTSGNWKNSEEEEFTWDEMNSGLTDHGPN
VSSNLSTDSWMADDENLEGEDQIQITRPFGAKVDREIPTAKKQVPGFGGHPPSSWQLQRQ
HSVDKLNLKPGYSEGFVSTLSGLPTNASSLAAKKGNQSFMPNAVVGTAKIVGQQSDSGDT
ESPSGQSPLRQQSPSLSATVHHHSMQNLVEQEMPQNLKTSQFLGGPRSQHIRDPSPTLRP
IVQVSNLRRSQEKDSQGSLSSVTSIRPKLQQQKLGPSPTEVTAKTKLPQSKISLARETSE
QLTTVNLPAAANKSGIIPKKSITSNLDPRNLPSQSGVQPTRSGRSSTPLISSGSAVASPS
SIDPLHNESSALPKKLQGKAGQPPRRLSTQPPASSNVSSSSAPSLNATNNNNLNPFKNLL
SSLVAKGLISAETESPTVVRSEVPLGSKDQTEISTTCSSLPVTSVSGSVAGLVSSSIDEV
AAATKPPLALPQSTSMEIRNLIGFDFRPNVIRDFHPLVISELLDDFPHHCQICGIRLKLE
EQLNRHLEWHASREQHGLINASRSWYPKSSVWISGKAEYSPELEFTDSVGVYDKETDSSE
FDTMIVTDENQCLCVLCGELFEDVYCQERNEWMFKGAVYMNYSDINSEMESRNVGPIIHA
KCLSENSTIINLDNDR
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggagagtacgcgcagatccttggacagatcgagagaaccgggtcccaagaagccaaga
ttgatcgacgaactcagctcacgacagttacctcaacgccaacaagggtctggggcagtt
gccacgttggcgtctgcgagatttcgaaccaatgacagagactcagaaaacagcgatttg
ggtcgtggcggtggcgttggcggctaccaccctcagcctccgccacaccaggaacttgtg
gctcagtacaggaccgctcttgctgagctaactttcaattcgaagcccataattaccaat
ttgactattattgccggagagaatcaatctgctgccaaggcaattgctgcaattgtttgt
gctaacattctagaggttccaagtgaccaaaaactgccatctctttatctcttggacagt
attgttaagaatatcgggtgggattatataaaatattttgctgccagactgcctgaggta
ttctgcaaggcatacagacaggttgatccttctgtccattcaagtatgagacatcttttt
ggaacttggaaaggagtctttcctcctcaatcccttcagatgattgagaaggaacttggc
tttgcacctgccgtcaatggttcagcttcggtatctgctactacagtcaggagtgattta
cagtcacaacgcccgccacatagtatccatgtgaatcccaagtatttagaaaggcagcgt
cttcagcagtcaagtgggagtaaaggagttaatgatatgactggagctattttaagctca
aatgaggattcagagaggccagatagagccttgggtccgtcacgaccatggttggatcct
aggatcaacatgcagaataatcagcacacccatagagatggatttagtgattctgttctc
ggaaagaccattggtggatcatgtgggggcagtgaatatagttctggcatttcaagtaat
ttgatttcaggggctggaagaactggaagtaggctcgttgatttaggaaatgaaaaacca
tggttcaaaacaggtgatgatgtagaaaccatatctgggcaaggaaatggtatcggtctc
aagcgcagtttttcaaatcatgaagcaccgaagtccattaatttggatgcacatcgtcag
ccaagacaagacataactaacatacagagcaatgtgacgtcaggtaactggaaaaattct
gaagaggaggaattcacgtgggatgaaatgaactctggtttgactgatcatggtcccaat
gtgtcaagcaatttgagcacagactcgtggatggctgatgacgaaaatttggaaggtgaa
gatcagatccaaattacacgcccttttggggcaaaggttgatagagaaatacccaccgct
aagaaacaagtacctggttttggtggccatccaccgtcatcatggcaattgcagaggcaa
cactcggttgataagctgaatctgaagccaggttactcagaaggatttgtgtctactctc
agtggtttacctaccaatgcaagttcattggctgccaaaaagggaaaccaatcttttatg
ccgaatgcagtagtaggaacggccaaaattgtgggacaacaatctgattcgggggatact
gaatccccttctgggcagtcacctttgcgacaacagtctccatcactgtcggcaacagta
caccatcattcaatgcaaaatttggttgagcaagaaatgccccagaatctcaaaacatct
caatttttgggaggtccaagaagtcaacatattagagatccatcacctacccttcgtccc
attgttcaggttagtaacttgcgaagatcacaggaaaaggactcgcagggctcattatct
tctgtaacttctattcgaccaaagcttcagcaacaaaagctgggcccttctccgactgaa
gttactgctaaaactaagttgccccagtctaaaatttctttagccagagaaacttcagaa
cagttgaccacagttaatttgccagctgcagctaacaagagtggaattatccccaagaaa
tcaattaccagtaatctggatccaaggaatcttccatctcagtctggggttcagcctact
cggtctggtaggtcttctaccccattaatttcttcaggatctgcagttgcatcaccatct
tcaatagatcctctgcataacgaatcatctgcactgccaaaaaaacttcaaggaaaggct
gggcaaccaccacgaaggctttctactcaaccacctgcgtcctctaatgtgagcagttcc
tcagctccgagcttaaatgctaccaataataataacttaaatccatttaaaaacctctta
agctcattggttgcaaagggtttgatatctgccgaaacagaatcgccaactgtggtacga
agtgaggtgccgctgggttccaaagatcaaactgaaatcagtaccacctgtagctcttta
ccagttacatcagtttctggttctgtagctggcctggtatcttcttccatagatgaggta
gccgctgctacaaaaccccctcttgcattacctcaatcaactagcatggaaatcagaaat
ctcattggctttgattttagacctaatgtaattagagatttccatccacttgtaattagt
gaattattggatgatttccctcatcactgccaaatttgcggtattaggcttaaactagaa
gaacagttaaatagacacttggagtggcatgcctcaagagaacaacatggtctaattaat
gcatcaagaagttggtatccaaagtcaagtgtttggatttctggcaaggcagaatattca
cccgagcttgagtttaccgactctgttggtgtatatgacaaggaaacagacagcagtgaa
tttgatacgatgattgtaacagatgaaaaccaatgcttgtgtgttttgtgtggcgagcta
tttgaagatgtgtactgtcaggaaaggaacgagtggatgttcaaaggggccgtttacatg
aactactcagatatcaatagtgagatggaaagtagaaatgtgggccccatcattcatgcc
aaatgcttatcagagaactcaactatcatcaatttggataatgatcgatga
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