Cajanus cajan (pigeon pea): 109796988
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Entry
109796988 CDS
T04868
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccaj03009
]
109796988
03012 Translation factors [BR:
ccaj03012
]
109796988
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109796988
5.6.2.5 RNA 5'-3' helicase
109796988
Ribosome biogenesis [BR:
ccaj03009
]
Eukaryotic type
Other ribosome biogenesis factors
109796988
Translation factors [BR:
ccaj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109796988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_19
AAA_30
Viral_helicase1
ResIII
DEAD
AAA_22
nSTAND3
AAA_16
AAA
UvrD-helicase
RuvB_N
AAA_7
PIF1
UvrD_C_2
NPHP3_N
ATPase
T2SSE
ABC_tran
SRP54
PhoH
IstB_IS21
Mg_chelatase
RRP36
Cep3
AAA_33
Zot
AAA_5
GatD_N
Motif
Other DBs
NCBI-GeneID:
109796988
NCBI-ProteinID:
XP_020212457
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All DBs
Position
3:complement(15031170..15041657)
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AA seq
644 aa
AA seq
DB search
MGSKKKASPLSLQQFISITAPLLDLEKDAEISSSIAIGASRNLDTAQKRGSTILNLKCVD
VQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLNKSDLGSPALGQGVVYRLKDSSIT
VAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPASDLIPVLFGERPPTV
SKKDVSFSPFNINLDHSQKEAVSKALSSKNAFLLHGPPGTGKTTTVVEIILQEVKRGSKI
LACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSGLANDIRK
EMKALNGKLLKTKDRNTRKDIQRELRTLSKEERKRQQLAVTDVLKCADVILTTLIGAFSK
KLDSTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTL
FERLADMYGDEITSMLTVQYRMHELIMDWSSKELYDSKIKAHPSVAAHMLYDLEGVKRTT
SSEPTLLLIDTAGCDMEEKKDEEDSTFNEGEAEVTVAHAKRLVQSGVLPSDIGIITPYAA
QVVLLKMLKNKEDRLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAV
TRSRRQCCLVCDTETVSGDGFLKRLIEYFEEHGEYLSASEYQNE
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggggagtaagaagaaggcatcgcctctctcattgcagcaattcatctccatcaccgct
cctcttcttgacttggaaaaggatgctgagatttcaagctcaatcgccatcggcgcctcc
aggaacttggacaccgctcaaaagaggggttccaccatcctcaacttgaagtgcgtcgat
gtccagacagggctcatggggaagtctctgattgagttccagtctacaaaaggagatgtt
cttcctgcacacaagtttagtactcatgatgtcgtcgttttaaaactcaacaagtctgat
ttaggttctcctgctcttggtcaaggtgtagtttacagattaaaggattcgtcaataact
gttgcttttgatgatataccagaagatggtttaaacagtcccctaaggctggaaaaagta
gcaaatgaggtgacatatcgcaggatgaaagatgcactgatacaattgagtaaaggagtg
cacaagggtcctgcctctgatctgattcctgtcttgtttggggagaggccaccgacagtg
tcaaagaaggatgtatccttctctccctttaatatcaatcttgatcattcccagaaagaa
gcggtttcaaaagctctatcatcaaagaatgcattcttgctgcatgggcctcctggaacg
ggaaaaactacaacagttgtagaaattatattacaagaagtgaaacgtggatctaagatt
cttgcttgtgctgcttcaaatattgctgttgataacattgttgagcggctagttccacat
agagttaagctggtgagactcggtcatcctgcacggttattgcctcaagtactggacagt
gcgctggatgctcaggtactacgaggagataatagtggtcttgcaaatgacattcggaaa
gaaatgaaggcattgaatggaaagcttctgaaaaccaaagacagaaatacgagaaaggac
atacaaagggaacttaggactctatccaaagaagaacgtaaaaggcagcagcttgctgta
acagatgtactcaagtgtgcagatgtaatattaactactttgattggggctttctctaag
aaactagacagcacttcatttgatttggtgattattgatgaagcagctcaagcacttgag
atagcatgctggatacctctgctgaagggttcaagatgtatacttgcaggggaccatctt
caacttcctccaaccattcaaagtgttgaagctgagaagaaaggcttaggaagaacactc
tttgaacgtcttgcagacatgtatggagacgaaatcacatcaatgcttactgtccagtac
cgcatgcatgaacttatcatggattggtcttctaaagagctttacgacagtaagatcaag
gctcatccaagtgttgctgcacatatgttatatgatcttgagggtgtgaagcggacaact
tcatctgaaccaacccttcttctcatagacacagctggatgtgatatggaagaaaagaaa
gatgaagaagatagcacctttaatgaaggcgaagctgaggttaccgtggctcatgcaaag
agactagtgcagagtggggtgcttccttctgatattggaattattaccccatatgctgcc
caggttgttttgctcaagatgttgaaaaacaaggaggaccggctgaaggatgttgaaatc
tcaacagttgatggtttccagggaagggagaaggaagccattattatatcaatggttcga
tcaaattcaaaaaaagaggttggctttctgagtgatcgccggcgaatgaatgtggctgtg
acacggtctagaaggcaatgctgtcttgtctgtgacacagagacagtcagtggtgatgga
tttctgaagcgattgattgagtattttgaggagcatggcgagtatctgagtgcatctgag
taccagaatgagtag
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