KEGG   Cajanus cajan (pigeon pea): 109797702
Entry
109797702         CDS       T04868                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03013  Nucleocytoplasmic transport
ccaj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109797702
  09122 Translation
   03013 Nucleocytoplasmic transport
    109797702
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccaj03019]
    109797702
   03041 Spliceosome [BR:ccaj03041]
    109797702
Messenger RNA biogenesis [BR:ccaj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     109797702
Spliceosome [BR:ccaj03041]
 Complex C
  Other components
   EJC/TREX
    109797702
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    109797702
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C DSE1_N WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 Beta-prop_WDR75_1st eIF2A Beta-prop_EML Beta-prop_EIPR1 NBCH_WD40 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_HPS5 WD40_MABP1-WDR62_1st Beta-prop_DCAF12 Tricorn_2nd TRM82_WD Beta-prop_IFT80_2nd WDR90_beta-prop_4th PAC11 Beta-prop_WDR41 Beta-prop_Nup120_160 DUF7099 TP_0598_N WD_LRWD1 Beta-prop_ACSF4 Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 109797702
NCBI-ProteinID: XP_020213412
LinkDB
Position
1
AA seq 313 aa
MEEQIPFKNLHSREYSGHKKKVHSVAWNCTGTKLASGSVDQTARIWHIEPHGHGKVKDIE
LKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT
HVAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSL
RPLDTLMAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIGF
NYTGDFIASASEDLFIDISNVQAGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA
DEGVFRIFGFENA
NT seq 942 nt   +upstreamnt  +downstreamnt
atggaggaacaaatcccatttaagaatctccatagccgagagtattccggtcacaagaag
aaggtgcactctgtggcttggaattgcactggtacaaaacttgcttctggctctgtggac
caaactgcgcgaatatggcacattgagccacatgggcatggcaaggtcaaggatattgaa
ttgaaaggtcacactgatagtgtggatcaactatgctgggaccccaaacatgctgacctg
attgcaactgcttctggtgacaagactgttcgtttgtgggatgctcgtagtggaaaatgc
tcacaacaggcagaacttagtggggagaatataaacatcacttacaaacctgatgggact
catgtagctgtaggtaacagggatgatgaattaacaatactggatgtccggaagttcaaa
ccaattcataggcgcaagttcaattatgaggtaaatgagattgcttggaacatgacgggt
gagatgttctttctaacgacaggaaatgggaccgtggaagtactgtcttacccatctctt
cgacctcttgatactctcatggctcatactgccggttgttattgcattgcaattgatcca
atgggaagatattttgctgttggaagtgccgattcccttgtcagcctgtgggatatctca
gagatgctctgcgtgcgtaccttcacaaagctggaatggcctgtccggacaattggcttc
aattatactggggattttattgcttctgcaagtgaagacttgttcattgatatttcaaat
gttcaagctggaagaacagtgcatcaaattccttgcagggctgcaatgaacagtgttgag
tggaatcccaaatacaatttacttgcatatgctggtgatgacaaaaacaagtatcaggct
gatgaaggtgtttttcgcatttttggttttgaaaatgcttag

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