KEGG   Cajanus cajan (pigeon pea): 109798448
Entry
109798448         CDS       T04868                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03030  DNA replication
ccaj03410  Base excision repair
ccaj03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109798448
   03410 Base excision repair
    109798448
   03420 Nucleotide excision repair
    109798448
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccaj03032]
    109798448
   03400 DNA repair and recombination proteins [BR:ccaj03400]
    109798448
Enzymes [BR:ccaj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     109798448
DNA replication proteins [BR:ccaj03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    109798448
DNA repair and recombination proteins [BR:ccaj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      109798448
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 109798448
NCBI-ProteinID: XP_020214338
LinkDB
Position
4:7620745..7643422
AA seq 2239 aa
MSGEGRRRDRRDTRASKKRKLNRTPEEELEAKLGFDLFTEGEKRLGWLLTFATSSVDDED
SYKTYSCIDLYFVAQDGSSFKSKFRFRPYFYVATKDKMEMDVEAYLRRRFEGQIADIEII
EKEDLNLKNHLSGLRKSYLKLSFDTVQQLMDVKRDLMPSIERNKAKSDAAEAFLSMSTER
SREHKHQDFLECIIDLREYDVPYHVRFAIDNDIRCGQWYDVGVSLNGVTLEKRTDLLQRA
EVRICAFDIETTKLPLKFPDAEYDLIMMISYMVDGQGYLIINRECVGDDIEDIEYTPKPE
FEGYFKVTNVQNETELLRLWFSHMQDLKPGIYVTYNGDFFDWPFLEQRATHLGFKMSDEL
GFKCDKNQGECRARYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPMEVNPEDMVR
FAMEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLM
VQAYKANVICPNKHQSDAEKFYNNRLLESETYIGGHVECLESGVFRSDIPSSFKLEPSAY
QQLINNLDRDLQYAIRVEGKNKIDLESVSNYDEVKNAIMEKLVKLRDAPIREECPLIYHL
DVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYS
LKTQIESEMVDDSENNNNKAMSHYYEKRASKSFLDLPKSEQQARLKERLKKYCQKAYKRV
LDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGELSKAKASGNSMKIQE
AQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKI
GKPLELDTDGIWCALPGSFPENFTFKTKDSKKLTISYPCVMLNVDVAINNTNDQYQTLTD
PIRKTYATHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKR
RGELKLIKVFQAELFDKFLHGSTLEECYSAVASVANRWLDLLDNQGKDIADSELLDYISE
SSTMSKSLADYGEQKSCAVTTAKRLADFLGNTMVKDKGLRCQYIVASEPKGAPVSERAVP
VAIFGTDAEVMKFYVRKWCKVSSDVGIRSIVDWSYYKQRLSSAIQKIVTIPAXXXXXXXX
PAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKLVDVFKSMNRNEHSEKHNDSNGVHL
VMDDEIVNELEDFGNKARSSTCRPRPIIRHYEANNERHLRKLNDQEDLEQQHHNDNSSKD
ELLSPLHQNEILCENVDRNVDYQGWLQIKKRMWRNILERTRKRRLESSKKSGRLNGVLEQ
MNGKGSQDRSHVSSYLKRLEVDLKKCHWQIIQLVPSSLIGQFFAWVVVDGSMHKIPISVP
RVFYLNSRSPITEEFVGKRVNKTLPHGRHSYNLYEVSINEIQYGEANKKLAALLADPDVE
GIYETKVPLEFNAIVQLGCVCKVDKTANRRSLQEPWNLSELHMKTTTECPYLDQSIPYFY
FYHSISEGRAIYVAYFPSSKAITVVVVNPYQNKDLSPTFLERQFHDACQASSIEPPLRND
INFKVEYVAHVKDAETVMQRVINGHSRGRENHAPMVAVIECPDVQLVKLGVRILDDFPCL
SIPYNARDNQYQILGWQQVAAKTGMQRCAASIQWLNKRIAISKYAHVPLGNFELDWLVFT
ADIFFSRALHDNQQVLWISDDGLPDLGGINGEQYCFVDEVDQPVITYSGAYRNVTVELKI
HNLAVNALLKCNLINEMEGGALLGFGHEYDSGEFSMSDQNGFDNSTSCAQAFRVLKQLIQ
RCLADAVTSGNVYADAILQNIYRWLCSPKSKLHDPALHQLLHKVMQKVFALLLAEFRKLG
ATIVFANFSKIIIDTGKCDLPRARAYSDSLLRTIQSRDLFEWVELEPLQFWCSLLFLDQY
NYGGIPAKSDEGMDDESRVGIISNWNIAEYLPKEVQDRFVYIVSQFMYIPWNYAQKLAAI
RTSLQNEDSCTPSINIGAAEAFESEITEYIKGQISSYFTPKLLEIVHDIGLHMKGMSRSE
NNQSISSGLPQFMADVHRGDAALEFVKLVCVVLFMDQSVQHEVLVMKKVLLKYIDVREFA
PEAEFHKPCHYFILPDVVCSYCNDCRDLDLCRDTALLTEEWRCAVPQCGQPYDRDVMENT
LLQVARQRERLYQVQDLLCNKCNQVKAAHLSEQCACAGSFRCKEDAKEFREKMQILFNIA
FCQKFQLLEEFVSWSLERR
NT seq 6720 nt   +upstreamnt  +downstreamnt
atgagcggcgaaggtcggagacgtgaccggagagacaccagggcgtcgaagaagcggaag
ctgaaccgcacccccgaggaagagctagaggcgaaattagggttcgatcttttcactgag
ggcgagaagcgactcggatggttactcacctttgcaacctcatctgttgatgatgaagac
agttacaaaacctacagttgcattgatctttacttcgttgcacaggatggctcttcgttc
aagtcaaaattcagatttcgaccttatttctatgtagctacaaaggacaaaatggagatg
gatgttgaggcatatctgagaagacgttttgaaggtcagattgcagatatcgaaattata
gagaaagaagacctgaaccttaaaaaccatttatctgggttaagaaaatcttatttaaag
ctttcatttgatactgtgcaacaattgatggatgtgaagagagacctgatgccttctatc
gaaagaaataaggcaaagtctgatgctgcagaagcctttttgtccatgtcaacagaaaga
agcagagaacataaacatcaagattttcttgagtgcataattgatcttcgtgaatatgat
gttccgtatcatgttcgctttgccattgacaatgatatacggtgtgggcagtggtatgat
gttggagtgtcccttaatggggttacacttgagaagaggacagatcttctgcagcgtgct
gaagttcgtatttgtgcatttgacattgagaccacaaaacttccattaaaatttcctgat
gctgaatatgatttaattatgatgatttcatacatggtagatggtcaagggtatttaatc
ataaatagagagtgtgtcggggatgatatagaggatatagaatacactccaaaaccggag
tttgaagggtattttaaggtgacaaatgttcaaaatgagactgagcttcttagattatgg
ttttctcatatgcaagatctaaaacctggtatctacgtgacatataatggtgacttcttt
gattggccattcctggaacaaagggcaacccatcttgggttcaaaatgagtgatgaattg
gggtttaaatgtgataaaaatcaaggggaatgtcgtgcaaggtatgcttgccatttggat
tgttttgcttgggttaagcgtgatagttatctccctcaggggagccaaggcctgaaggct
gttacaaaagcaaagttgggttatgatccaatggaggtgaatcctgaagacatggttcgc
tttgcaatggaaaagcctcagatgatggcttcctattctgtttctgatgcagtggcaact
tattacttatatacaacttatgttcatccctttattttctcgcttgcaaccattataccc
atgtcaccagatgaggttttgcgcaaaggtagtggaaccctatgtgaaatgttgcttatg
gtgcaggcgtacaaggctaatgttatctgccctaacaaacatcaatctgatgcagagaag
ttttataataatcgtcttcttgagagtgagacatacattggtggtcatgtggaatgtctt
gaaagtggtgtatttagatctgatattccatctagttttaaactcgagccatctgcctat
cagcaactgatcaacaaccttgatcgagatctacagtatgctataagagtggagggtaag
aataagattgatttggaatctgtgtctaattatgatgaagtaaagaatgcaatcatggaa
aagcttgtaaagttaagagatgcgccaatacgtgaagaatgccctctcatttatcatctg
gatgtagctgctatgtatccaaacataattttaacaaaccgacttcagccaccatcaatt
gttacggatgaagtttgcactgcatgtgattttaatcgtccaggaaagacttgcttacgc
aagcttgagtgggtttggcgtggagaaacattcatggcaaagaaaagtgactattattca
ttaaagacacagattgaatcagagatggttgatgattctgagaacaacaacaacaaagcc
atgtcccactattacgagaagagggcatcaaaatcttttcttgaccttcccaagtcagag
caacaagcaagactgaaagagcgtttaaagaaatactgccagaaggcatataaacgggta
cttgacaaaccagttactgaactccgtgaagcaggaatctgcatgcgtgaaaatccattt
tatgttgacacagttcgcagtttccgggatagaagatatgaatataaaggtctcaataag
gtttggaagggagaactgtcgaaggcaaaggctagtggaaattctatgaagatccaggaa
gcacaagatatggttgtgctttatgattcattgcaacttgctcacaagtgtatacttaat
tccttttatggatatgtcatgcgcaagggtgcaagatggtactccatggaaatggctgga
gtagtgacatatactggtgcaaaaatcattcagaatgctcgcttgctagtagagaaaata
ggaaaaccacttgaactagacacagatggtatctggtgtgcacttcctggatcttttccg
gaaaatttcacttttaaaacaaaagactcaaagaagttgacaatctcatacccttgtgtt
atgcttaatgttgacgtggcaataaataatacaaatgatcagtaccagacactcacagat
ccaatcaggaaaacttatgcaactcacagcgaatgctctattgaatttgaggtggatgga
ccatacaaggcaatgatccttcctgcttccaaggaagaaggaattttaattaagaagcga
tatgcggtttttaatgatgatggaacccttgcagagcttaaaggttttgagattaagcgc
agaggtgaactgaagctaatcaaagtcttccaggctgaactttttgacaagtttctccat
ggttcaaccttagaggaatgctattcagctgtcgcttcagtggcaaaccgctggcttgat
cttcttgataaccagggaaaggatattgcagacagtgagttgcttgattacatatcagaa
tcaagtaccatgagcaagtctttagctgattatggtgagcagaagtcttgtgctgttacc
actgctaaacggctagctgactttcttggtaatacaatggtcaaagataaaggtcttcga
tgtcagtacatagtagcaagtgaacccaagggagcaccagtaagtgagcgtgctgttcct
gtggcaatatttggaactgatgctgaggtaatgaagttctatgtccgaaaatggtgcaag
gtctcatcagatgttggcattcggtccatagttgactggtcctattacaagcagcggctt
agttctgcaattcaaaaaattgtcaccattcctgcnnnnnnnnnnnnnnnnnnnnnnntt
cctgctgcaatgcaaaaggttgcaaatcccgtccctagggtggttcatcctgattggctg
cataagaaggtccgtgagaaggaggacaagtttcgccaacggaaattagttgatgtcttt
aagtcaatgaaccggaatgagcactcagaaaagcataatgactcaaatggtgtccatctt
gtgatggatgatgagattgttaatgagttggaggactttggaaacaaggccaggagttct
acatgcagacctagaccaattatacgacattatgaagctaataatgaacggcatttgagg
aagctcaacgatcaagaagatttggagcaacagcatcataatgataatagcagtaaggat
gagctactttcaccattacaccaaaatgaaatattatgtgaaaatgttgacagaaatgta
gattatcaaggatggcttcaaataaagaagcgaatgtggagaaatattctggaacggaca
aggaagcgaagattggagagttcaaagaaatctggccgtttaaatggtgttcttgaacaa
atgaatggtaaggggagtcaggacagaagtcatgtcagttcatatcttaaaaggcttgag
gtagacttaaaaaagtgccactggcagataatacaactagttcccagttcattgataggc
caattttttgcttgggttgttgttgatgggagtatgcataagattcccatttctgttcct
agagtcttttacctaaattcaagatcaccaattactgaagaatttgtgggtaaacgtgtc
aacaagactcttcctcatggaaggcatagttataacctgtatgaggtatcaattaatgaa
attcaatacggggaagcaaacaaaaaacttgcagctcttctggcagatcctgatgttgag
ggaatatatgaaaccaaggtgccactggagtttaatgctatagtccagctcggttgtgta
tgtaaggtggacaaaactgctaatagacgtagtcttcaagaaccatggaatttgagtgaa
ttgcacatgaagaccacaactgaatgtccttatctcgaccaatctataccctacttttac
ttttaccatagcatctctgagggacgagctatatatgttgcatattttccttcatcaaaa
gcaataactgtcgtggtagttaatccctatcaaaacaaagatttatcaccaacttttctt
gaaagacaatttcacgatgcttgccaagcttcgtctattgagccgcctttgaggaatgac
attaattttaaggtggaatatgttgcacatgtcaaggatgctgaaacagtgatgcaaaga
gtgataaatggtcacagtcgtgggagggaaaatcatgcgcctatggttgctgtcattgaa
tgtccagatgttcaactagtaaaattgggcgttcgtattctggatgattttccatgcctg
agtattccttataatgcacgtgataatcagtatcagattcttggatggcaacaagttgcg
gccaaaactggaatgcaacgttgtgctgcatcaattcaatggctaaataagaggattgct
atctcaaaatatgcccatgtaccgttggggaactttgaacttgactggcttgtatttact
gcagatatcttcttttcaagggcattgcatgataaccaacaggtactttggatatctgat
gatggccttccagatctaggtggcattaatggtgaacagtattgttttgttgacgaggtt
gaccaacctgtgattacgtattccggagcttatagaaatgttactgtggagctaaagata
cacaacctggctgtaaatgctcttctcaaatgcaacctaattaatgagatggaaggaggc
gcactattaggatttggtcatgaatacgattctggagaattttctatgagtgatcagaat
ggttttgacaactctacctcatgtgcacaagcctttcgtgtccttaaacagttgattcaa
cggtgccttgcagatgcagttacatcaggaaatgtttatgcagatgcaatattgcaaaat
atatatagatggctttgcagccctaaatcaaaacttcatgatccagctctccaccagcta
ctccacaaggtcatgcaaaaggtctttgcattgttgttggcagagttccgcaagttaggt
gctacaattgtgtttgcaaacttctcaaagattatcatagacaccgggaaatgtgatctg
cctagagccagggcttattctgacagtttgttaagaactatacaatctagagatctattt
gaatgggttgagcttgaaccactgcagttctggtgctcgttgctattcttggatcagtat
aactatggtggaataccagcaaaatctgatgaaggcatggatgatgagtctcgagtaggc
attatatctaactggaatattgccgaatacttgccaaaagaagtccaagaccgttttgtt
tacatcgtttctcaattcatgtatattccctggaattatgcacaaaaactagcagcaatc
aggacctcattgcagaatgaagactcctgtaccccatcaattaacattggggctgcagag
gcttttgaatcagaaataacagaatatatcaaagggcagattagctcttactttacaccc
aaactgctagaaattgttcacgatattggtcttcacatgaaggggatgagcagatcagag
aacaaccagagtatatcatctggccttcctcaatttatggctgatgtccatagaggggat
gctgccttggaatttgtcaagcttgtctgtgttgtactgttcatggaccaaagtgtgcaa
catgaagttttggttatgaaaaaggttttgctcaaatatattgatgtcagggagtttgct
ccagaagctgagtttcacaaaccttgtcattatttcatcttacccgatgtcgtatgcagc
tattgtaatgactgcagagacttggatttgtgccgtgacactgctttattaactgaggaa
tggcgttgtgcggtgccacagtgtggccagccttatgaccgcgacgtgatggaaaatact
cttcttcaggttgcgagacaaagagaaaggttataccaagtccaagatctgctttgtaat
aaatgcaatcaggtgaaagctgcacatttgtccgagcaatgtgcatgtgcaggctcattt
aggtgtaaggaagatgcaaaagaatttcgggaaaagatgcaaattttgttcaacatagct
ttttgtcagaaattccaacttctcgaagaatttgtctcttggagtttagaaagaagatag

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