KEGG   Cajanus cajan (pigeon pea): 109798612
Entry
109798612         CDS       T04868                                 
Name
(RefSeq) THO complex subunit 4A
  KO
K12881  THO complex subunit 4
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03013  Nucleocytoplasmic transport
ccaj03015  mRNA surveillance pathway
ccaj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109798612
  09122 Translation
   03013 Nucleocytoplasmic transport
    109798612
   03015 mRNA surveillance pathway
    109798612
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccaj03019]
    109798612
   03041 Spliceosome [BR:ccaj03041]
    109798612
Messenger RNA biogenesis [BR:ccaj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     109798612
    TREX complex
     109798612
Spliceosome [BR:ccaj03041]
 Complex C
  Other components
   EJC/TREX
    109798612
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    109798612
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3 Turandot
Other DBs
NCBI-GeneID: 109798612
NCBI-ProteinID: XP_020214533
LinkDB
Position
4:complement(3163335..3166303)
AA seq 250 aa
MSAALDMTLDDIIKNNKKSGSGNSRGRGARTSRSGPGPSRRFSNRAANRAAPYSTAKAPE
ATWQHDMYADQHVAVGGYPAQGGRAPSIETGTKLYISNLDFGVSNDDIKELFSEVGDMKR
HGVHYDRSGRSKGTAEVVFSRRSDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPGVAPAT
NGAIGNFNGVPRSGQGRGGALRRPGGRGQGIRRDRGRGRGRGGGGRGEKVSAEDLDADLE
KYHSEAMQTE
NT seq 753 nt   +upstreamnt  +downstreamnt
atgtctgcagctctcgatatgaccctcgacgacataatcaagaacaacaaaaaatctgga
tccggaaactcgcgtggccgcggcgcccgaacctccagatcgggacctggaccttctcgc
cgcttctctaaccgagccgccaaccgcgccgctccttattccaccgctaaggcgccggag
gccacgtggcagcacgatatgtatgcagatcagcacgtggctgtggggggataccctgct
caaggaggccgtgcgccttccattgagactgggaccaaactttacatttcgaacttggat
tttggagtttccaacgatgatatcaaggaattgttttctgaagttggtgacatgaaacgg
cacggggttcattatgacagaagtggcagatcgaagggtacggctgaagtagtattttca
cgacgatctgatgccgtggctgctgtaaaaaggtacaacaatgttcagctagatgggaaa
ccaatgaagatagagattgtgggaaccaacattgctacacctggtgtggctcctgccaca
aatggagctattggaaactttaatggagttcctcgaagtggacaaggaagaggtggtgca
ttaagaaggccaggaggaagaggacaaggcattcgaagggatcgaggacgtggaagaggt
cgtggtggaggaggtcgtggcgaaaaggtatccgcagaagatcttgatgctgatttggag
aagtatcattcagaggcaatgcaaactgaatga

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