Cajanus cajan (pigeon pea): 109799309
Help
Entry
109799309 CDS
T04868
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
ccaj
Cajanus cajan (pigeon pea)
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccaj04131
]
109799309
Membrane trafficking [BR:
ccaj04131
]
Protein recycling
Others
EARP complex
109799309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
EXOC6_Sec15_N
TetR_C_30
RNA_polI_A14
Motif
Other DBs
NCBI-GeneID:
109799309
NCBI-ProteinID:
XP_020215445
LinkDB
All DBs
Position
4:complement(7127727..7145281)
Genome browser
AA seq
1121 aa
AA seq
DB search
MQPNLFPFGSVLGNPFIFNDDLSEGGIESSRVFFLLPFFLLSQGGAMDLSKVGEKILSSV
RSARSLGLLPPVPDRPEVPARAAAAAAVARALAGLPPHQRYSLSSSSEELSSIYGSRPQG
QVVEELEGEFYEEDFDPVRHVLEHIPAEENELTYFEKQAALRLAQLDRVAEHLSRHVMEH
HEVMVKGMNLVRELEKDLRIANVICMNGRRHLTSSMNEVSRDLIVNSYSKKKQALLDMLP
TLTELQRALDMQSTLESLVEEGNYWKAFQVLSEYLQLLDSLSELSAIQEMSRGVEVWLGR
TLQKLDALLLGVCQEFKEDGYITVIDAYALIGDTVGLAEKIQSFFMQEVISKTHSVLKAI
VHEDEEGLPQNSRLTYSDLCLQIPDSKFRQCLLRTLAVLFDLMCSYHEIMDFQLDRKDSS
AQTRTNCNEDISCSPSEAREVDSDVRACNNSMSSSGDVIHGSSSREESATMSSLTETIGS
PHSDSCDPIREAGKEDSSTSSIESPWYHLRQEATTFVSQTLQRGRRNLWHLTASRVSVLL
SSAAACTASIHQFLKNYEDLSVFILTGEAFCGIEAVEFRQKLKVACENYFIAFHRQNVHA
LKMVLEKETWLKLPPETVQIISFAGLIGDGAPLISLSSGKSINVSAIHSDKSVNMVQTGA
RRNGFSPWIKSGNPFSQKLPTSNEGHGYSQPNGSVCSEFDRSSANNLHDDKVSPRKSDSN
QMNGSNSVSEDENEDLLADFIDEDSQLPSRSSQPHHSRTLSSHGNDEENTTQTGSSLCLL
KSMDKYARLMQKLEVVNVEFFKGICQLFEIFFYFIYETFGLQSTSSSGKGSTNSLNYRLR
TALSRVNQDCEEWIKSQSSSPTSLSSSFVHAELTPTSPPNTNFLHSPGTSLGLKERCVAV
DTISLVARILNRSKAHLQSMLLQSNSTILEDFYVHLVDAVPDLTEHVHRTTVRLLLHING
YVERVANCKWELKDLGMEHNGYVDLLLGEFKHYKTRLANGGLRKETQDQLLDYGLENVAE
TLVEGLSRVKRCSDEGRALMSLDLQVLINGLHHFVSLNVKPKLQMVETFIKAYYLPETEY
VHWARAHPEYSKSQIVGLINLVATMKGWKRKTRLEILEKIE
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgaatttgtttccctttggaagcgtgctggggaatccgttcatcttcaatgac
gatttgagcgagggagggatcgagagctctagggttttcttcttgctcccgttcttcttg
ctctcccagggaggagcaatggatttgtccaaagtcggcgaaaaaatcttgagctccgtt
aggtccgcgagatctctcggattgctccctcccgttcctgatcgccccgaggttccagct
cgagctgctgctgcagctgccgtagctcgtgctcttgcagggttacctcctcatcagaga
tatagtctttcatcaagttcagaagaattgagttcaatttatggaagcagacctcaaggg
caagtagtggaggagctggagggtgaattttatgaagaggattttgatccagttaggcat
gttttagagcacattccagctgaagaaaacgagctaacatattttgaaaaacaggctgcc
cttagattggcacaactggatagagtagctgagcatttatctcgccatgttatggagcat
catgaagtaatggtgaaggggatgaatttggtcagagaattggaaaaagacttaagaatt
gcaaacgtcatctgtatgaatggaagaagacacttgacatcatctatgaatgaggtttca
agggatttgattgtgaattcttattcaaaaaagaaacaagctcttctggacatgcttcca
accttgactgaacttcaacgtgctttggacatgcaatcaacacttgaatcccttgtagag
gaagggaattactggaaggcatttcaagtcctatctgagtatttgcaactcttagatagt
ttgtcagagctttcagcaatacaagagatgagtcgtggtgtggaggtttggctgggaaga
actttacagaagctggatgctcttttattgggagtatgccaggaattcaaggaagatggc
tatataacagtaattgatgcatatgcattaataggggatactgtcggtcttgctgaaaag
atacagagtttcttcatgcaagaagttatatcaaaaacacactctgtattaaaggctatt
gtgcatgaggatgaggagggacttccgcaaaatagtaggctaacttacagcgatctatgc
cttcaaatacctgattcaaagttcaggcaatgcttattaagaacattggctgttctattt
gaccttatgtgttcataccatgaaattatggatttccagctagatagaaaggattcatca
gcgcaaactagaaccaattgcaatgaagacatttcctgtagtccaagtgaggctcgggaa
gttgattcagatgtaagagcctgcaacaattctatgtccagttccggtgatgtaatacat
ggctcatcttctagggaggaatctgcaacaatgagctcactgactgaaactattggttca
ccacacagtgattcttgtgatccaattagggaggctggaaaggaggacagttcaacatca
agcattgaatctccttggtaccatcttcgccaagaagctacaacatttgtttcacagacc
cttcaaagaggacgcaggaatctgtggcatctcactgcaagtcgtgtgtcagtattgctt
tcttctgctgcagcttgtacagctagcatccatcaattcttgaaaaattatgaagatctc
agtgtctttattttgaccggcgaagccttttgtggaattgaagcagttgagtttaggcag
aaattaaaggttgcttgtgaaaactatttcatagcttttcatcgacaaaatgtgcatgcc
ctaaaaatggttttggagaaagagacttggctaaaattacctccagaaacagtacaaatt
atcagttttgcagggcttattggggatggagcaccattgatttctttatccagcggtaaa
tcaattaatgtgagtgcaatccattctgataaatcggtgaatatggttcagactggtgct
aggaggaatgggttttctccctggattaaaagtggaaaccctttctcgcaaaaattacca
acctccaacgaaggtcatggttactcccaacccaatggatcagtttgtagtgaatttgac
agaagttctgccaataaccttcatgatgataaagtctcacctagaaagagcgattcaaat
caaatgaatggttccaattctgtttcagaagacgaaaatgaggatctacttgctgacttt
attgatgaagacagtcaactaccaagtcgaagttctcaacctcatcattcaagaactctc
tcttcacatggtaatgatgaagagaatacaacccagactggatcttctctctgtctttta
aagtctatggataaatatgcaaggcttatgcagaaattggaagtggtaaatgttgagttc
tttaagggaatatgccaattgtttgaaatttttttctattttatatacgaaacatttggt
ctgcaaagcactagctcaagtggaaaaggctcgaccaactcacttaattatcgcttgaga
acagctttatccagagtaaaccaagattgtgaagagtggatcaagtctcaatcgtcttca
cctacatctttgagttcatcatttgtacatgctgagttgacacctacaagccctcccaat
acaaattttcttcactctccagggacttctttgggtctcaaggaaagatgtgtggctgtt
gacactatatctcttgttgctcgaatattgaatagatctaaagctcatctccaatcaatg
ctcttgcaaagtaattcaactatactcgaggatttctatgttcatctggtggatgctgta
ccagatcttacagaacatgttcatcggactacagtgagactactgttgcacattaatgga
tatgttgaacgtgttgccaattgtaaatgggaattaaaagatcttggcatggagcataat
ggatatgttgatttgttgctgggggagtttaaacactataaaacacgacttgctaatgga
ggacttcgtaaagagactcaagaccaattattggattatgggcttgaaaatgtggcggaa
actcttgttgaaggactttcacgggtgaagagatgtagtgatgaaggacgagctcttatg
tcattagatctgcaggtcttaattaatgggttacatcattttgtgtcgctgaatgtgaag
cccaagctacaaatggttgaaactttcatcaaggcttactaccttcccgagacagaatat
gtgcactgggcacgagcacacccggaatacagtaaaagccagattgttggactgatcaac
cttgttgctactatgaaaggttggaagaggaaaaccaggttggaaatacttgaaaagatt
gaatga
DBGET
integrated database retrieval system
