Cajanus cajan (pigeon pea): 109799440
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Entry
109799440 CDS
T04868
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109799440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109799440
03041 Spliceosome [BR:
ccaj03041
]
109799440
03009 Ribosome biogenesis [BR:
ccaj03009
]
109799440
03016 Transfer RNA biogenesis [BR:
ccaj03016
]
109799440
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109799440
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109799440
Spliceosome [BR:
ccaj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109799440
Complex C
U4/U6.U5 tri-SnRNP related factors
109799440
Ribosome biogenesis [BR:
ccaj03009
]
Eukaryotic type
Pre-60S particles
Helicases
109799440
Transfer RNA biogenesis [BR:
ccaj03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109799440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
DUF7579
Motif
Other DBs
NCBI-GeneID:
109799440
NCBI-ProteinID:
XP_020215595
LinkDB
All DBs
Position
5:1409383..1419840
Genome browser
AA seq
976 aa
AA seq
DB search
MEKEKEPPTLGKRREPEATDTSSKPKKPRSMERTCVHEVAVPVGYVSSKDETLHGTLSNP
LHTGPTAKSYPFALDPFQQVSIACLERNESILVSAHTSAGKTAVAEYAIAMSFRDKQRVI
YTSPLKALSNQKYRELSQEFQDVGLMTGDVTLSPNATCLVMTTEILRGMLYRGSEVLKEV
AWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHKQPCHV
VYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFREDNFLKLQDTFAKQNVGDVKRGGKGGG
RGGKGGNASGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTQEEKETV
EHVFQNAVLCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKALF
ATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICIIMID
EQMEMNNLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQFQYEKAL
PDMGKKVSLLEQEVALLDASGEAEVSEYHKLKLEIAQLEKKMMSKIIRPEIILYFLVPGR
LIKVREGGTDWGWGVVVNVVKKPSGGGYIVDTLLHCSPGSNENSSRPKPCPPRPGEKGEM
HVVPVQLPLISALGKLRVSIPSDLXPLEARQSILLAVQELGNRFPQGLPKLNPLKDMDVR
DAEIVELVNQIEELEKKLFAHPMHKHQDVDQIKCFERKAEVNHEIQQLKTKMRDSQLQKF
CEELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA
LASCFIPGDKSTEQIQLRTELARPLQQLQDSARRIAEIQHECKLDINVNEYVESTVRPYL
MDVIYSWSKGANFADVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEAALEQKFAAA
SESLRRGIMFSNSLYL
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggagaaggaacctccgacactgggaaagcgaagggagccagaagccacagac
acgagttcaaagccgaagaaaccgcgcagcatggagcgcacgtgcgtgcatgaggtcgcc
gtgcctgtcggctacgtctcgagcaaggacgagaccctccacggaaccctctcgaaccct
ctccacaccggtcccacggccaagtcctatcccttcgcactcgaccccttccagcaggtc
tccatcgcctgtctcgagcgcaacgagtccatcctcgtctccgcccacacctccgccggc
aaaaccgccgtggccgagtacgccatcgccatgtccttccgcgacaagcagcgcgtcatc
tacacctccccgctcaaggcgctcagcaaccagaagtaccgcgagctcagccaggagttc
caagacgtcggcctcatgaccggcgacgtcacgctctcaccgaacgccacgtgtctcgtc
atgaccaccgagattctccgcggaatgctctaccgaggctctgaggtcttaaaagaagtc
gcgtgggttatattcgacgagattcactacatgaaggatcgcgaacgaggcgttgtttgg
gaagagagtataatcttcctcccgccggcgattaagatggttttcctctccgctactatg
tccaatgcgacggaattcgcggagtggatttgcaatattcacaagcagccttgtcacgtg
gtttatactgatttcagacctacgccattgcagcactacgtgttccccatgggagggagt
gggttgtatttggttgtggacgagaatgaacagttcagggaggataactttctgaagctg
caggatactttcgcgaagcagaacgttggggatgtgaagaggggtggtaaaggcggtgga
agaggtgggaaaggtggcaatgcttctggtggttctgatatttacaagattgttaagatg
atcatggaacggaaattccagcctgttatcatctttagctttagtagaagagagtgtgaa
caacatgccatgtctatgtccaagcttgacttcaacacccaagaggaaaaggaaacagtg
gaacatgttttccaaaatgcagttctctgcttgaatgaagaagacaggagcttacctgct
attgagttgatgttgccacttcttcagcgagggattgctgttcatcattctggacttctt
cctgttataaaagaattggttgagcttcttttccaggaaggtcttgtaaaagccctcttt
gctactgaaacatttgcaatgggtttaaatatgccagcaaaaactgttgtattcactgct
gtaaagaagtgggatggtgatagtcaccgttatattggatctggtgaatatatacagatg
agtggaagggctggacgtcgtggcaaagatgagcgtggaatttgtatcataatgattgat
gaacagatggaaatgaataacctcaaagacatggttttgggtaaacctgctcctttagtt
agtacattcaggcttagctactactcaattttaaatttgatgagccgagcagaaggccaa
tttactgccgaacacgtaatacgaaattcatttcatcaatttcaatatgaaaaggcctta
ccagatatggggaaaaaggtgtcactgctggagcaggaagtagcattgcttgatgcttca
ggggaggctgaagtatctgaatatcataagctaaaactggaaatagcacagctggagaag
aagatgatgtcaaaaataatcaggcctgaaataattctttattttcttgtccctggtcgg
ttgatcaaagtaagagaaggtggaactgattggggctggggtgttgtagtcaatgttgtt
aagaaaccttctggtggtggttatattgttgatactttacttcattgttcacctggttca
aatgaaaacagttcacggccaaaaccatgtccaccccgccctggagagaaaggtgaaatg
catgtggtccctgttcaattaccattaatctctgcccttggtaaactgagggtatctata
ccttctgatctctgacccttggaagccaggcaaagtatactgcttgctgtacaggagctg
ggcaatcgttttccccaagggcttccaaagcttaaccctttaaaggacatggatgtacgg
gacgcagagatagttgaactagtcaatcaaatagaagaacttgagaaaaaattgtttgcc
catcctatgcataagcatcaagatgtggatcaaattaaatgctttgagaggaaagcagaa
gtgaatcatgaaattcagcaactgaagacaaaaatgcgggattcccagctacaaaaattt
tgtgaagaactaaagaatcgctcacgagtcttaaagaagcttggtcatattgatgctgat
ggtgtagttcagttgaagggacgggcagcctgcttgattgacacgggcgatgaactcctt
gttaccgaattaatgtttaatggtacttttaatgaccttgaccatcatcaagttgctgcc
cttgcgagttgtttcataccaggagataaatcaactgagcagatacaactgagaacagag
cttgcaaggcctctgcagcagcttcaagatagtgccagaaggatagcagagatacaacat
gaatgcaaattggatataaatgtaaatgagtatgtggaatcaacagtgaggccatacttg
atggatgtgatctactcatggtcgaagggagcaaattttgctgatgttatacaaatgact
gacatctttgagggaagtatcattcggagtgctagaaggcttgacgagtttttgaatcag
ttgcgtgctgctgctaatgcagttggagaggctgccttggagcagaaatttgcagcagca
agtgaaagccttcgacgaggtattatgttttcgaattctctgtatctgtga
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