Cajanus cajan (pigeon pea): 109799645
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Entry
109799645 CDS
T04868
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109799645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccaj03041
]
109799645
03009 Ribosome biogenesis [BR:
ccaj03009
]
109799645
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109799645
Spliceosome [BR:
ccaj03041
]
Complex A
U1 snRNP components
U1 related factors
109799645
Complex B
109799645
Ribosome biogenesis [BR:
ccaj03009
]
Eukaryotic type
Pre-60S particles
Helicases
109799645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SWI2_SNF2
PRAI
AAA_30
CMS1
Cas3-like_C_2
DUF58
AAA_22
Motif
Other DBs
NCBI-GeneID:
109799645
NCBI-ProteinID:
XP_020215839
LinkDB
All DBs
Position
1:5570219..5579140
Genome browser
AA seq
564 aa
AA seq
DB search
MSYVPPHLRNASSTAIATARTPSVALDNNNTTNNHHHHSHNTKLAFPSNNCSSLHNASRR
TAAAPPSPRILAAPDTVFPQWQPSERVSRMTPQQIEEVRSRLNLDVAVATDSPPAPAPIE
SFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQ
HCLAQSPIRRSGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSEL
RAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQ
TLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVE
EASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRN
SSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRD
MFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGASSINIE
DKYKFMITAANVKREGAADSAWDD
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtgcctccgcacctcagaaacgccagctccaccgccatcgccaccgccaga
accccctccgtagccctagacaacaacaacaccaccaacaaccaccaccaccacagccac
aacaccaagctcgcattcccctccaacaattgctcctccctccacaatgcctctcgccgg
accgccgccgccccgccgtcgccgcgcattctcgccgcccccgacaccgtcttcccgcaa
tggcaaccctccgaacgcgtttcccgcatgactccgcaacagattgaagaggtccgctcc
cggcttaatcttgatgttgctgttgcgaccgactctcctcctgcacctgcaccaatagaa
tcgtttactgatatgtgtttgcatccgagtatcatgaaggatattgcttaccacgaatac
accaggccaacttcgatccaggcacaggccatgccaattgctctcagtggaagggatcta
ttaggttgtgctgaaactggtagtggaaagactgcagctttcacaattcctatgatacag
cattgcttggcccaatctccaattcggcgcagtggtcccctagcattagtcttggctcct
acaagagaactcgcccaacaaatagagaaagaggttaaagcttttagcagatctcttgag
tcattaaaaactgctatagttgtgggcggaactaacattgaaaagcagaggtctgaactt
agagctggagttgaaatagcagttgccacccccggaagattcattgatcacttacaacaa
ggcaacacttccctctctagaatttcttttgttgttctagacgaggcagatagaatgctt
gatatgggttttgaaccacagataagagaggtaatgagaaatcttccagagaaacatcaa
acactgctgtttagtgcgactatgcctgtggagattgaagcattagcaaaggagtactta
gccagcccagtgcaagtgaaggttgggaaagtgagtagcccaacaactaatgtttcacaa
actcttgtgaaaatttctgaaaatgagaagattgatcggctcctagatttacttgtagag
gaagcatcacaggctgaaaaatgtggtcatccatttccattaacaattgtatttgttgag
aggaagacaaggtgtgatgaagttgctgaagcattggtagctcaaggattatctgcagtt
tctcttcatggtggtcgcagtcagagtgaaagagaggctgccttgcatgatttccggaat
agctccaccaacattttggttgccactgatgtcgcatctcgtggcttggatgtcacagga
gtttcgcatgtcatcaatctagatcttccaaagaccatggaagattatgtacaccggatt
ggaaggacagggcgtgcaggatcaactggcttagctacttcattttacactgatcgtgac
atgttccttgtggcgaatataaggaaagcaatagctgatgctgaatctgggaacacactg
acatttgcaaccggaaaggttgctagaaggaaggagaaagaagcagcagctgcacagaag
gaggcaaatattgctttatccaaacagttaggattgggagcttcttcaattaacattgaa
gataagtataaattcatgattactgccgcaaatgttaaaagggagggtgcagcagatagt
gcctgggatgattaa
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