Cajanus cajan (pigeon pea): 109800071
Help
Entry
109800071 CDS
T04868
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109800071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109800071
03012 Translation factors [BR:
ccaj03012
]
109800071
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109800071
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109800071
Translation factors [BR:
ccaj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109800071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109800071
NCBI-ProteinID:
XP_029127707
LinkDB
All DBs
Position
6:2869456..2873491
Genome browser
AA seq
544 aa
AA seq
DB search
KSVFFQDIDVDTHYKNYSLGVRKSLDAWSGSQIDLGLVEAAIEYICRNEDGGAILVFLTG
WDEISKLLDKLKGNNLLGDPSKFLILPLHGSMPTVNQCEIFDRPPPNKRKIVLATNIAES
SITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYRLYP
KLIHDAMPQYQLAEILRTPLQELCLHIKSLQLGTVGSFLEKALQPPDPLAVKNAIELLKT
IGALDEQEELTPLGRHLCNIPLDPNIGKMLLMGSIFQCLNPALTIAAALAYRNPFVLPIN
RKEEADEAKQSFAGDSCSDHIALLKAFEGWKDAKRSGNEKQFCWENFLSPVTLRLIDDMR
MQFLNLLSDIGFVDKSRGANTYNQYSHDLEMVCAILCAGLYPNVVQCKRRGKRTAFYTKE
VGKVDIHPASVNAGVHLFPLPYMVYSEKVKTTSIYIRDSTNISDYALLLFGGNLVPNKNE
GIEMLGGYLHFSASKSVIELIRKLRGELDKLLNRKIEEPGLDISSEGKGVVAAAVELLHS
QVMR
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
aaatctgttttctttcaggatattgatgtggatactcattacaaaaattacagcttgggt
gttagaaaatctcttgatgcttggtcaggttcacagattgatttgggtttggtagaggca
gcaattgaatatatatgtcggaatgaagatggtggagcaattctggtatttctcactggc
tgggatgaaatttctaagctgcttgacaaacttaaaggaaataacttacttggagaccct
agcaagtttttaatccttcctttacatggctcaatgcctactgtcaaccaatgtgaaata
tttgaccgtcccccccctaacaagagaaaaattgtgcttgcaacaaatattgctgagagt
agcatcaccatagatgacgttgtgtatgttatagactgtggcaaagcaaaggagaccagc
tatgatgctctaaataagcttgcttgcctgttgccatcatggatttcaaaggcttcagct
catcagagacgtggtcgtgctggtcgagtgcaacctggagtttgttataggctgtatcca
aaactaatccatgatgcaatgcctcaatatcagttagctgaaatcctccgaactcctttg
caagagttgtgcctccatattaaaagtttgcagcttggaactgtgggatcatttttagaa
aaggcacttcagccaccagatcctttagctgttaagaatgctattgaacttctcaaaaca
attggggcattagatgaacaggaggagctcactccattgggtcggcatctttgtaacata
cctttggacccaaatataggaaagatgcttctaatgggctctatctttcagtgcctcaat
cctgccctaactattgctgctgctcttgcttaccgcaacccatttgtcttgcccataaac
agaaaagaggaagctgatgaagcaaaacaatcttttgctggtgattcttgcagtgatcac
atagcccttctcaaagcttttgaaggatggaaagatgcaaagcgaagtgggaacgaaaag
cagttttgttgggagaatttcctatcccctgtgactttgcggttgatcgatgatatgaga
atgcagtttctcaatttattgtctgacatcggatttgttgacaagtccaggggtgctaat
acttacaaccagtacagtcatgatttggagatggtgtgtgcaattctctgtgctgggctc
taccctaatgttgttcagtgcaaaagaagaggaaaacggacagcattctacacaaaagaa
gtagggaaggttgacatccatcctgcttctgttaatgctggggttcatctcttccctctg
ccctacatggtatatagcgaaaaggtgaaaacaaccagcatctatattagagactctacc
aacatttcagattatgccctacttctatttggtggtaatcttgttcctaacaaaaacgaa
ggcattgaaatgcttggaggttaccttcatttctctgcttcaaagagtgttatcgagtta
ataaggaaattacgtggggagcttgacaagcttctgaacagaaaaattgaagaaccagga
ttggacatttcctctgaaggaaagggggtggttgctgctgctgttgagttgctgcatagt
caagtcatgagataa
DBGET
integrated database retrieval system
