Cajanus cajan (pigeon pea): 109801987
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Entry
109801987 CDS
T04868
Name
(RefSeq) LOW QUALITY PROTEIN: general negative regulator of transcription subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109801987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109801987
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109801987
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109801987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
109801987
NCBI-ProteinID:
XP_020218755
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All DBs
Position
7:5431763..5445985
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AA seq
890 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAELEGLSVKKGKSRPPRLTHLETSITRHKA
HIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFTDVDDLYSSLPLDKVET
LEDLVTIPPGISKVAPSLSLKNSSTVSVSQSASASASQTSDTSVQEQADDTASQDSNSDI
VAKTPPPKSAGISSASSTPAGNHSSPVSVNVSGHNLSSPPAVAALPGSNSVRNVIENTNV
SNSSSVNQSTSSKEEEINSFPSRRPSPSLSDASLLRGRNGLSNQATASIPLGSGNMVSGN
GALGSVPTASEIAKRNILGADDRLGSSGMVQPLVSPLSNRLILPQAAKANDGTVSVDSST
VNEASAVSGRVFSPSVVPGMQWRPGSPFQNQNEAGQLRGRTEIAPDQREKFLQKYQQVQQ
GHSTLLNMPSLVGGNHKQFSAQQQNPLLQQFNSHGSSVSSQSGIGLGVQSTSLSGISSAS
LQQPPNSVHSPSSQQPLVPGVSKDADVGNSKIEEQQQHQNFPDESTAESTSSSGIGKNII
NEDESKSAYAVDSPAGVSASLPESAQTSRDIDLSPGQPLQSNQPIANLGVIGRRNGAELG
TIGDSFSGSSVSTGGVRDQLYNLQMLEAAHFKIPLPKDSERPRTYTPKHPAIVPPSYPQV
QXNPAFWERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEE
PKVATDEYEQGTYVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDDLLV
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcgaaagcttcagggagagatagatcgtgttcttaagaaggtccaggaa
ggtgttgaagtcttcgatagcatctggaacaaggtttacgacacggacaatgctaaccag
aaggagaaatttgaagcagacctcaagaaggaaattaagaagctacaaaggtatcgggac
caaattaagacttggattcagtccagtgagatcaaggacaagaaggttagtgcctcatat
gagcaggctctggtggatgcccgcaagctaattgagcgagaaatggaaagatttaagata
tgtgagaaggaaactaagaccaaagcattctccaaggaaggattaggtcaacagccgaag
actgatccaaaagagaaggctaaatcggagacaagggattggttaaacaatgtggttgga
gagttagaatcccagattgatagctttgaggcggagcttgaagggctttctgtcaaaaaa
ggaaagagcaggccacccagattgacacatctagagacatcaattactcggcacaaggct
catataaaaaaatgtgaattcattttgaggctactagataatgatgaattaagtcctgag
caggttaatgatgtcaaagatttcttggacgactatgtcgagcgtaatcaggaggatttc
gatgattttactgatgttgatgacctatacagttcattacctttagacaaggtggagacc
ctagaagatcttgttacaattccccctggtatttctaaggtagcacctagtcttagcttg
aagaattcttcgacagtatcagtatcacaatcagcatctgcatctgcatcacaaacatct
gatacttctgtccaggagcaagctgacgacacagcttcccaggatagcaattctgacatt
gttgccaaaactccacctcctaaaagtgctggaattagttctgcttcttcaactcctgct
ggcaaccatagttcccctgtttctgtgaatgtatctggtcataacttgtctagtccacct
gctgttgcagccctacctggttcaaattctgtgcggaatgtcatagagaataccaatgtt
tccaattcatcttctgtaaatcaatctacctcttcaaaagaagaagagattaatagcttc
cctagcaggagaccatctccatcactttctgatgcatcacttttgaggggcagaaatgga
ctgtcaaatcaagcaacagccagtattcctcttggttctggaaacatggtttctggcaat
ggggccctaggatcagtccccacagcctctgaaatagctaaaaggaacatattgggagct
gatgatagacttggaagtagtgggatggtgcagcctcttgtatccccgctaagtaataga
ttgatcttgcctcaggctgcaaaggctaatgatggaacagtttcagttgactctagtact
gttaatgaagcttcagctgtatctgggagagttttctccccttctgtggttcctggcatg
caatggagacctggaagtccctttcagaatcagaatgaagcaggccagcttcgtggaaga
actgaaattgctcctgatcaaagggaaaagtttttacagaagtatcagcaagtgcagcaa
gggcacagtacccttcttaatatgccttctcttgttgggggaaaccataagcagttttct
gcccaacagcaaaatccccttttacagcagtttaattctcatggctcatctgtttcttct
caatctggtattggacttggagtccagtccacaagtctcagtggtatttcttctgcatca
ctacagcagccacccaattctgtccattccccctctagtcaacagccattggtgccaggt
gtttctaaagatgcagatgttggcaattctaagattgaagaacagcagcaacatcagaat
tttcctgatgagtcaacagctgaatctacttctagctctgggattggcaagaatatcata
aacgaagatgaatcaaaatcagcatatgccgtagattctcctgcaggagtgtctgcctct
cttccagaatctgctcaaacatccagggacatcgatttgtctcctggccaaccattacaa
tccaatcaacctattgccaacctaggtgtcattggaagaagaaatggtgctgaacttgga
accattggtgatagttttagtggatcgagtgttagtactggtggagtgcgtgatcaatta
tataatttgcaaatgctcgaggcagctcacttcaaaattccactacccaaagactcagaa
cgtcccaggacttatactcctaagcatccggcaattgtgcctcctagctatcctcaagta
cagnataatcctgccttttgggaaagagtaggtcttgaaccatttggcactgatactctg
ttctttgcattttattatcaacagaatacttaccaacaatatttggctgcaaaggagtta
aagaagcagtcttggagataccaccgaaagtataatacttggtttcagcggcatgaagag
cccaaagttgctaccgatgaatatgagcagggaacatatgtgtactttgatttccatatt
gcaaatgatgacatgcaacatggatggtgtcaaagaatcaagactgaattcacttttgag
tataattatcttgaagatgatcttcttgtatag
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